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Mutant Information

Mutant Name	FN908-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN908-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19554973 C-A Hetero INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 23345377 A-G Hetero INTERGENIC
SBS Chr2 1320220 G-A Hetero INTERGENIC
SBS Chr2 2597303 C-T Hetero INTERGENIC
SBS Chr2 3478517 C-T Hetero INTERGENIC
SBS Chr2 5853301 C-A Hetero UTR_5_PRIME
SBS Chr2 6101801 T-A Hetero INTERGENIC
SBS Chr2 36695297 G-A Homo INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 26022877 G-T Hetero INTRON
SBS Chr3 27010313 C-T Hetero INTERGENIC
SBS Chr4 28694034 T-A Hetero INTERGENIC
SBS Chr5 6702031 T-C Homo INTERGENIC
SBS Chr5 9274644 T-A Hetero INTERGENIC
SBS Chr5 23016268 C-T Hetero INTERGENIC
SBS Chr6 5261091 T-A Homo INTERGENIC
SBS Chr6 5911873 G-A Homo INTERGENIC
SBS Chr6 15347347 A-G Hetero INTERGENIC
SBS Chr6 25110141 C-T Hetero INTERGENIC
SBS Chr7 1136746 A-G Hetero INTERGENIC
SBS Chr7 4905030 T-A Hetero INTERGENIC
SBS Chr7 8167894 T-C Hetero INTRON
SBS Chr7 9103449 C-T Hetero INTERGENIC
SBS Chr7 11048834 A-G Hetero INTERGENIC
SBS Chr7 12268410 C-T Hetero INTERGENIC
SBS Chr7 22796816 G-A Homo INTERGENIC
SBS Chr8 471926 C-T Hetero INTRON
SBS Chr8 14479782 G-T Homo INTERGENIC
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr9 11993290 C-T Hetero INTERGENIC
SBS Chr9 17421297 A-G Hetero INTERGENIC
SBS Chr10 5947082 C-T Homo INTERGENIC
SBS Chr10 19722570 T-G Hetero INTERGENIC
SBS Chr11 12854754 C-T Hetero INTERGENIC
SBS Chr11 16086001 G-C Homo INTERGENIC
SBS Chr12 6140390 C-G Hetero INTERGENIC
SBS Chr12 8358159 C-T Hetero INTERGENIC
SBS Chr12 9611462 G-T Hetero INTERGENIC
SBS Chr12 11307176 T-C Hetero INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4976381 4976383 2
Deletion Chr10 5288921 5288936 15
Deletion Chr10 5826889 5826898 9
Deletion Chr12 8467318 8467322 4
Deletion Chr12 9805001 9982000 176999 7
Deletion Chr11 10231815 10231822 7
Deletion Chr2 10912001 11066000 153999 16
Deletion Chr5 12363486 12363496 10
Deletion Chr3 13046921 13046926 5
Deletion Chr11 14517263 14517267 4
Deletion Chr4 14656239 14656251 12
Deletion Chr2 18332282 18332285 3
Deletion Chr11 19166982 19166993 11
Deletion Chr1 19542713 19542717 4 OsKitaake01g194900
Deletion Chr2 20481783 20481790 7
Deletion Chr6 21095957 21095965 8
Deletion Chr5 21151125 21151132 7
Deletion Chr10 23751580 23751596 16
Deletion Chr4 23787288 23787300 12
Deletion Chr4 23890380 23890385 5
Deletion Chr4 30560901 30560907 6
Deletion Chr2 35666012 35666024 12 OsKitaake02g375100
Deletion Chr4 36379004 36379010 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 642505 642508 2
Insertion Chr7 3534492 3534494 1
Insertion Chr1 6413509 6413512 2
Insertion Chr1 43966419 43966424 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 20241058 20871129 OsKitaake10g160600
Inversion Chr10 20241062 20871136 OsKitaake10g160600
Inversion Chr1 24701938 24742561
Inversion Chr1 24701945 24742590

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19554973	C-A	Hetero	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	23345377	A-G	Hetero	INTERGENIC
SBS	Chr2	1320220	G-A	Hetero	INTERGENIC
SBS	Chr2	2597303	C-T	Hetero	INTERGENIC
SBS	Chr2	3478517	C-T	Hetero	INTERGENIC
SBS	Chr2	5853301	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	6101801	T-A	Hetero	INTERGENIC
SBS	Chr2	36695297	G-A	Homo	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	26022877	G-T	Hetero	INTRON
SBS	Chr3	27010313	C-T	Hetero	INTERGENIC
SBS	Chr4	28694034	T-A	Hetero	INTERGENIC
SBS	Chr5	6702031	T-C	Homo	INTERGENIC
SBS	Chr5	9274644	T-A	Hetero	INTERGENIC
SBS	Chr5	23016268	C-T	Hetero	INTERGENIC
SBS	Chr6	5261091	T-A	Homo	INTERGENIC
SBS	Chr6	5911873	G-A	Homo	INTERGENIC
SBS	Chr6	15347347	A-G	Hetero	INTERGENIC
SBS	Chr6	25110141	C-T	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Hetero	INTERGENIC
SBS	Chr7	4905030	T-A	Hetero	INTERGENIC
SBS	Chr7	8167894	T-C	Hetero	INTRON
SBS	Chr7	9103449	C-T	Hetero	INTERGENIC
SBS	Chr7	11048834	A-G	Hetero	INTERGENIC
SBS	Chr7	12268410	C-T	Hetero	INTERGENIC
SBS	Chr7	22796816	G-A	Homo	INTERGENIC
SBS	Chr8	471926	C-T	Hetero	INTRON
SBS	Chr8	14479782	G-T	Homo	INTERGENIC
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr9	11993290	C-T	Hetero	INTERGENIC
SBS	Chr9	17421297	A-G	Hetero	INTERGENIC
SBS	Chr10	5947082	C-T	Homo	INTERGENIC
SBS	Chr10	19722570	T-G	Hetero	INTERGENIC
SBS	Chr11	12854754	C-T	Hetero	INTERGENIC
SBS	Chr11	16086001	G-C	Homo	INTERGENIC
SBS	Chr12	6140390	C-G	Hetero	INTERGENIC
SBS	Chr12	8358159	C-T	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Hetero	INTERGENIC
SBS	Chr12	11307176	T-C	Hetero	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4976381	4976383	2
Deletion	Chr10	5288921	5288936	15
Deletion	Chr10	5826889	5826898	9
Deletion	Chr12	8467318	8467322	4
Deletion	Chr12	9805001	9982000	176999	7
Deletion	Chr11	10231815	10231822	7
Deletion	Chr2	10912001	11066000	153999	16
Deletion	Chr5	12363486	12363496	10
Deletion	Chr3	13046921	13046926	5
Deletion	Chr11	14517263	14517267	4
Deletion	Chr4	14656239	14656251	12
Deletion	Chr2	18332282	18332285	3
Deletion	Chr11	19166982	19166993	11
Deletion	Chr1	19542713	19542717	4	OsKitaake01g194900
Deletion	Chr2	20481783	20481790	7
Deletion	Chr6	21095957	21095965	8
Deletion	Chr5	21151125	21151132	7
Deletion	Chr10	23751580	23751596	16
Deletion	Chr4	23787288	23787300	12
Deletion	Chr4	23890380	23890385	5
Deletion	Chr4	30560901	30560907	6
Deletion	Chr2	35666012	35666024	12	OsKitaake02g375100
Deletion	Chr4	36379004	36379010	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20241058	20871129	OsKitaake10g160600
Inversion	Chr10	20241062	20871136	OsKitaake10g160600
Inversion	Chr1	24701938	24742561
Inversion	Chr1	24701945	24742590

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes