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Mutant Information

Mutant Name	FN914-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN914-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10580239 G-A Hetero INTERGENIC
SBS Chr1 26741655 C-T Hetero INTERGENIC
SBS Chr1 27484866 C-T Hetero INTERGENIC
SBS Chr1 27632591 C-T Hetero INTERGENIC
SBS Chr1 31413218 A-G Hetero INTRON
SBS Chr1 38903624 G-A Hetero INTERGENIC
SBS Chr1 38903625 A-T Hetero INTERGENIC
SBS Chr2 14990065 A-G Homo UTR_3_PRIME
SBS Chr2 26882234 T-C Homo INTERGENIC
SBS Chr3 17233762 T-C Hetero INTERGENIC
SBS Chr3 18701345 G-A Hetero INTERGENIC
SBS Chr3 20029206 G-A Hetero INTERGENIC
SBS Chr3 24183470 A-T Hetero INTERGENIC
SBS Chr3 24244207 C-T Hetero INTERGENIC
SBS Chr3 32781075 A-G Hetero INTERGENIC
SBS Chr4 1725216 T-C Hetero INTRON
SBS Chr5 4847504 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 24844685 G-C Hetero INTERGENIC
SBS Chr5 26618583 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 30029744 G-A Hetero INTERGENIC
SBS Chr6 8572502 G-A Hetero INTERGENIC
SBS Chr7 9221102 C-T Homo INTRON
SBS Chr7 10496304 A-G Hetero INTERGENIC
SBS Chr9 10366669 G-T Hetero SYNONYMOUS_CODING
SBS Chr9 19770617 C-A Hetero INTERGENIC
SBS Chr10 6738129 G-A Hetero INTERGENIC
SBS Chr10 6979554 A-T Hetero INTERGENIC
SBS Chr10 17334335 T-A Hetero INTERGENIC
SBS Chr10 18144996 T-C Hetero INTERGENIC
SBS Chr11 4318001 A-T Homo INTERGENIC
SBS Chr11 9855573 A-C Hetero INTERGENIC
SBS Chr12 8237407 G-A Hetero INTERGENIC
SBS Chr12 8237408 G-A Hetero INTERGENIC
SBS Chr12 22900018 G-T Hetero INTRON

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4231454 4231580 126
Deletion Chr1 5621975 5621980 5 OsKitaake01g072000
Deletion Chr4 5960254 5960258 4
Deletion Chr4 6034705 6034706 1
Deletion Chr6 6513032 6513035 3 OsKitaake06g085100
Deletion Chr1 8858001 8870000 11999 2
Deletion Chr4 9652875 9652879 4
Deletion Chr3 9660691 9660693 2
Deletion Chr7 11306850 11306857 7
Deletion Chr10 11701001 11788000 86999 5
Deletion Chr9 12284180 12284184 4
Deletion Chr2 13691309 13691311 2
Deletion Chr11 14138850 14138861 11
Deletion Chr6 14430306 14430318 12
Deletion Chr6 14472617 14472618 1
Deletion Chr2 15735009 15735012 3
Deletion Chr10 18054760 18054762 2
Deletion Chr6 18786129 18786131 2
Deletion Chr10 18875546 18875553 7 OsKitaake10g134400
Deletion Chr8 25038511 25038530 19
Deletion Chr6 27391920 27391930 10
Deletion Chr4 27952791 27952794 3 OsKitaake04g207500
Deletion Chr5 29116027 29116038 11 OsKitaake05g275500
Deletion Chr1 29196652 29196658 6
Deletion Chr3 32801819 32801820 1
Deletion Chr3 33134858 33134861 3
Deletion Chr1 34569406 34569411 5
Deletion Chr4 35133544 35133552 8
Deletion Chr1 42220706 42220710 4 OsKitaake01g464700

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 13008715 13008718 2
Insertion Chr5 30239995 30240003 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3399002 3463570 2
Inversion Chr8 3399004 3463575 2
Inversion Chr12 7172523 7422621
Inversion Chr12 7172529 7422634

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7172529 Chr10 15993741
Translocation Chr12 7422634 Chr10 15993595

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10580239	G-A	Hetero	INTERGENIC
SBS	Chr1	26741655	C-T	Hetero	INTERGENIC
SBS	Chr1	27484866	C-T	Hetero	INTERGENIC
SBS	Chr1	27632591	C-T	Hetero	INTERGENIC
SBS	Chr1	31413218	A-G	Hetero	INTRON
SBS	Chr1	38903624	G-A	Hetero	INTERGENIC
SBS	Chr1	38903625	A-T	Hetero	INTERGENIC
SBS	Chr2	14990065	A-G	Homo	UTR_3_PRIME
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr3	17233762	T-C	Hetero	INTERGENIC
SBS	Chr3	18701345	G-A	Hetero	INTERGENIC
SBS	Chr3	20029206	G-A	Hetero	INTERGENIC
SBS	Chr3	24183470	A-T	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr3	32781075	A-G	Hetero	INTERGENIC
SBS	Chr4	1725216	T-C	Hetero	INTRON
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	24844685	G-C	Hetero	INTERGENIC
SBS	Chr5	26618583	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	30029744	G-A	Hetero	INTERGENIC
SBS	Chr6	8572502	G-A	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	10496304	A-G	Hetero	INTERGENIC
SBS	Chr9	10366669	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	19770617	C-A	Hetero	INTERGENIC
SBS	Chr10	6738129	G-A	Hetero	INTERGENIC
SBS	Chr10	6979554	A-T	Hetero	INTERGENIC
SBS	Chr10	17334335	T-A	Hetero	INTERGENIC
SBS	Chr10	18144996	T-C	Hetero	INTERGENIC
SBS	Chr11	4318001	A-T	Homo	INTERGENIC
SBS	Chr11	9855573	A-C	Hetero	INTERGENIC
SBS	Chr12	8237407	G-A	Hetero	INTERGENIC
SBS	Chr12	8237408	G-A	Hetero	INTERGENIC
SBS	Chr12	22900018	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4231454	4231580	126
Deletion	Chr1	5621975	5621980	5	OsKitaake01g072000
Deletion	Chr4	5960254	5960258	4
Deletion	Chr4	6034705	6034706	1
Deletion	Chr6	6513032	6513035	3	OsKitaake06g085100
Deletion	Chr1	8858001	8870000	11999	2
Deletion	Chr4	9652875	9652879	4
Deletion	Chr3	9660691	9660693	2
Deletion	Chr7	11306850	11306857	7
Deletion	Chr10	11701001	11788000	86999	5
Deletion	Chr9	12284180	12284184	4
Deletion	Chr2	13691309	13691311	2
Deletion	Chr11	14138850	14138861	11
Deletion	Chr6	14430306	14430318	12
Deletion	Chr6	14472617	14472618	1
Deletion	Chr2	15735009	15735012	3
Deletion	Chr10	18054760	18054762	2
Deletion	Chr6	18786129	18786131	2
Deletion	Chr10	18875546	18875553	7	OsKitaake10g134400
Deletion	Chr8	25038511	25038530	19
Deletion	Chr6	27391920	27391930	10
Deletion	Chr4	27952791	27952794	3	OsKitaake04g207500
Deletion	Chr5	29116027	29116038	11	OsKitaake05g275500
Deletion	Chr1	29196652	29196658	6
Deletion	Chr3	32801819	32801820	1
Deletion	Chr3	33134858	33134861	3
Deletion	Chr1	34569406	34569411	5
Deletion	Chr4	35133544	35133552	8
Deletion	Chr1	42220706	42220710	4	OsKitaake01g464700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3399002	3463570	2
Inversion	Chr8	3399004	3463575	2
Inversion	Chr12	7172523	7422621
Inversion	Chr12	7172529	7422634

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes