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Mutant Information

Mutant Name	FN919-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN919-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1402273 C-G Homo INTERGENIC
SBS Chr1 3021782 C-T Hetero INTERGENIC
SBS Chr1 21802826 C-T Hetero INTERGENIC
SBS Chr1 25476566 C-T Hetero INTERGENIC
SBS Chr1 33619275 C-A Hetero INTERGENIC
SBS Chr1 34652555 A-G Hetero INTERGENIC
SBS Chr1 36684810 C-T Homo INTERGENIC
SBS Chr1 37019661 C-T Hetero INTERGENIC
SBS Chr2 26888918 G-A Hetero UTR_3_PRIME
SBS Chr2 27671984 T-A Hetero INTRON
SBS Chr2 28692906 T-A Hetero INTERGENIC
SBS Chr3 9054468 T-A Homo INTERGENIC
SBS Chr3 18954231 G-A Hetero INTERGENIC
SBS Chr3 19657274 T-C Hetero INTERGENIC
SBS Chr3 19747305 G-A Hetero INTERGENIC
SBS Chr3 29626158 T-C Hetero INTERGENIC
SBS Chr4 8907940 T-C Hetero INTERGENIC
SBS Chr4 16577308 T-A Homo INTERGENIC
SBS Chr4 31726745 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g251100
SBS Chr5 13719556 C-T Hetero INTERGENIC
SBS Chr5 29560725 C-T Hetero INTERGENIC
SBS Chr6 8901391 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 9879497 C-T Hetero INTERGENIC
SBS Chr6 11157851 A-T Hetero INTERGENIC
SBS Chr6 13704146 C-T Hetero INTERGENIC
SBS Chr6 20947388 G-A Hetero INTERGENIC
SBS Chr6 25072228 G-A Hetero INTERGENIC
SBS Chr7 4333807 T-C Hetero INTERGENIC
SBS Chr7 5852125 A-C Hetero INTERGENIC
SBS Chr7 16421549 A-G Hetero INTERGENIC
SBS Chr7 20488894 T-C Hetero INTERGENIC
SBS Chr7 21468884 A-G Hetero INTRON
SBS Chr7 23982523 C-A Hetero INTERGENIC
SBS Chr8 3071112 A-G Homo INTERGENIC
SBS Chr8 9111238 C-A Homo INTERGENIC
SBS Chr9 18892027 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 18892028 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g150500
SBS Chr9 20777367 T-C Hetero INTRON
SBS Chr10 488684 C-A Homo INTERGENIC
SBS Chr10 12070584 G-A Hetero INTRON
SBS Chr10 12070585 C-A Hetero INTRON
SBS Chr10 13029077 C-T Homo INTERGENIC
SBS Chr11 9173834 C-T Homo INTERGENIC
SBS Chr11 15107712 C-T Hetero INTERGENIC
SBS Chr11 28399856 G-C Hetero INTERGENIC
SBS Chr12 459569 C-A Hetero INTERGENIC
SBS Chr12 7618399 C-T Hetero INTERGENIC
SBS Chr12 8171555 A-C Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 53565 53576 11
Deletion Chr7 1682020 1682022 2
Deletion Chr1 2730210 2730211 1
Deletion Chr8 2925656 2925659 3
Deletion Chr1 3486601 3486602 1 OsKitaake01g046300
Deletion Chr7 4402566 4402568 2
Deletion Chr6 5282389 5282399 10 OsKitaake06g071100
Deletion Chr5 8308132 8308133 1
Deletion Chr12 8815804 8815805 1
Deletion Chr2 8871715 8871717 2
Deletion Chr5 8995337 8995338 1
Deletion Chr11 13645541 13645552 11
Deletion Chr2 15739704 15739724 20
Deletion Chr3 16694826 16694835 9
Deletion Chr11 20266428 20266429 1
Deletion Chr3 21320167 21320176 9
Deletion Chr9 22472711 22472718 7
Deletion Chr1 22493192 22493208 16
Deletion Chr3 23625729 23625735 6
Deletion Chr3 24024031 24024036 5
Deletion Chr7 24149001 24216000 66999 7
Deletion Chr2 24363973 24363976 3
Deletion Chr7 25600050 25600055 5
Deletion Chr7 25663060 25663067 7
Deletion Chr8 26413880 26414025 145
Deletion Chr5 27059544 27059546 2
Deletion Chr7 27381358 27381368 10 OsKitaake07g254600
Deletion Chr5 27522780 27522781 1
Deletion Chr5 28521438 28521445 7
Deletion Chr4 30221081 30221085 4
Deletion Chr1 30340698 30340714 16 OsKitaake01g299200

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33719472 33719475 2
Insertion Chr3 2398596 2398599 2
Insertion Chr4 1061702 1061705 2
Insertion Chr4 3556156 3556159 2
Insertion Chr4 22576228 22576231 2
Insertion Chr7 22848895 22848898 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 6296473 6341267
Inversion Chr12 6296490 6341277
Inversion Chr1 10231275 11071188
Inversion Chr1 11071197 11405117

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 13153880 Chr1 7422592
Translocation Chr3 13153892 Chr1 7412872

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1402273	C-G	Homo	INTERGENIC
SBS	Chr1	3021782	C-T	Hetero	INTERGENIC
SBS	Chr1	21802826	C-T	Hetero	INTERGENIC
SBS	Chr1	25476566	C-T	Hetero	INTERGENIC
SBS	Chr1	33619275	C-A	Hetero	INTERGENIC
SBS	Chr1	34652555	A-G	Hetero	INTERGENIC
SBS	Chr1	36684810	C-T	Homo	INTERGENIC
SBS	Chr1	37019661	C-T	Hetero	INTERGENIC
SBS	Chr2	26888918	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	27671984	T-A	Hetero	INTRON
SBS	Chr2	28692906	T-A	Hetero	INTERGENIC
SBS	Chr3	9054468	T-A	Homo	INTERGENIC
SBS	Chr3	18954231	G-A	Hetero	INTERGENIC
SBS	Chr3	19657274	T-C	Hetero	INTERGENIC
SBS	Chr3	19747305	G-A	Hetero	INTERGENIC
SBS	Chr3	29626158	T-C	Hetero	INTERGENIC
SBS	Chr4	8907940	T-C	Hetero	INTERGENIC
SBS	Chr4	16577308	T-A	Homo	INTERGENIC
SBS	Chr4	31726745	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g251100
SBS	Chr5	13719556	C-T	Hetero	INTERGENIC
SBS	Chr5	29560725	C-T	Hetero	INTERGENIC
SBS	Chr6	8901391	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	9879497	C-T	Hetero	INTERGENIC
SBS	Chr6	11157851	A-T	Hetero	INTERGENIC
SBS	Chr6	13704146	C-T	Hetero	INTERGENIC
SBS	Chr6	20947388	G-A	Hetero	INTERGENIC
SBS	Chr6	25072228	G-A	Hetero	INTERGENIC
SBS	Chr7	4333807	T-C	Hetero	INTERGENIC
SBS	Chr7	5852125	A-C	Hetero	INTERGENIC
SBS	Chr7	16421549	A-G	Hetero	INTERGENIC
SBS	Chr7	20488894	T-C	Hetero	INTERGENIC
SBS	Chr7	21468884	A-G	Hetero	INTRON
SBS	Chr7	23982523	C-A	Hetero	INTERGENIC
SBS	Chr8	3071112	A-G	Homo	INTERGENIC
SBS	Chr8	9111238	C-A	Homo	INTERGENIC
SBS	Chr9	18892027	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	18892028	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g150500
SBS	Chr9	20777367	T-C	Hetero	INTRON
SBS	Chr10	488684	C-A	Homo	INTERGENIC
SBS	Chr10	12070584	G-A	Hetero	INTRON
SBS	Chr10	12070585	C-A	Hetero	INTRON
SBS	Chr10	13029077	C-T	Homo	INTERGENIC
SBS	Chr11	9173834	C-T	Homo	INTERGENIC
SBS	Chr11	15107712	C-T	Hetero	INTERGENIC
SBS	Chr11	28399856	G-C	Hetero	INTERGENIC
SBS	Chr12	459569	C-A	Hetero	INTERGENIC
SBS	Chr12	7618399	C-T	Hetero	INTERGENIC
SBS	Chr12	8171555	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	53565	53576	11
Deletion	Chr7	1682020	1682022	2
Deletion	Chr1	2730210	2730211	1
Deletion	Chr8	2925656	2925659	3
Deletion	Chr1	3486601	3486602	1	OsKitaake01g046300
Deletion	Chr7	4402566	4402568	2
Deletion	Chr6	5282389	5282399	10	OsKitaake06g071100
Deletion	Chr5	8308132	8308133	1
Deletion	Chr12	8815804	8815805	1
Deletion	Chr2	8871715	8871717	2
Deletion	Chr5	8995337	8995338	1
Deletion	Chr11	13645541	13645552	11
Deletion	Chr2	15739704	15739724	20
Deletion	Chr3	16694826	16694835	9
Deletion	Chr11	20266428	20266429	1
Deletion	Chr3	21320167	21320176	9
Deletion	Chr9	22472711	22472718	7
Deletion	Chr1	22493192	22493208	16
Deletion	Chr3	23625729	23625735	6
Deletion	Chr3	24024031	24024036	5
Deletion	Chr7	24149001	24216000	66999	7
Deletion	Chr2	24363973	24363976	3
Deletion	Chr7	25600050	25600055	5
Deletion	Chr7	25663060	25663067	7
Deletion	Chr8	26413880	26414025	145
Deletion	Chr5	27059544	27059546	2
Deletion	Chr7	27381358	27381368	10	OsKitaake07g254600
Deletion	Chr5	27522780	27522781	1
Deletion	Chr5	28521438	28521445	7
Deletion	Chr4	30221081	30221085	4
Deletion	Chr1	30340698	30340714	16	OsKitaake01g299200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6296473	6341267
Inversion	Chr12	6296490	6341277
Inversion	Chr1	10231275	11071188
Inversion	Chr1	11071197	11405117

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes