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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN930-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN930-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13489836 T-C Hetero INTRON
SBS Chr1 41244478 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g450400
SBS Chr2 8356695 A-T Homo INTERGENIC
SBS Chr2 11626995 T-A Homo INTERGENIC
SBS Chr3 21914805 C-A Homo INTERGENIC
SBS Chr3 33558592 C-G Homo UTR_5_PRIME
SBS Chr3 37538566 A-T Hetero INTERGENIC
SBS Chr5 28389481 G-C Hetero INTRON
SBS Chr5 30065847 C-A Hetero INTERGENIC
SBS Chr6 7414951 A-T Hetero INTRON
SBS Chr6 20075484 G-T Hetero INTERGENIC
SBS Chr6 26726259 G-A Hetero INTERGENIC
SBS Chr6 26726286 T-A Hetero INTERGENIC
SBS Chr6 30014211 G-A Hetero INTERGENIC
SBS Chr7 3020214 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g037700
SBS Chr7 13813716 A-G Hetero INTERGENIC
SBS Chr7 24794354 C-T Homo INTERGENIC
SBS Chr7 24796371 C-T Homo INTERGENIC
SBS Chr7 24796391 T-C Homo INTERGENIC
SBS Chr8 14077234 G-C Hetero INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr8 19821378 A-G Hetero INTRON
SBS Chr9 6939465 G-A Hetero INTERGENIC
SBS Chr10 5271822 T-C Hetero INTERGENIC
SBS Chr10 9120386 T-C Hetero INTERGENIC
SBS Chr10 13211324 G-A Hetero INTERGENIC
SBS Chr10 15647677 C-A Hetero INTERGENIC
SBS Chr10 17266108 G-A Homo INTERGENIC
SBS Chr11 12330703 C-T Homo INTERGENIC
SBS Chr11 18897141 G-A Hetero INTRON
SBS Chr12 25552349 T-C Homo INTRON

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 257328 257335 7
Deletion Chr6 19266826 19266827 1
Deletion Chr9 22181737 22181740 3
Deletion Chr8 28111965 28111973 8
Deletion Chr3 29689001 29735000 45999 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14881151 14881154 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 6136188 6532678
Inversion Chr1 6136196 6532701

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13489836	T-C	Hetero	INTRON
SBS	Chr1	41244478	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g450400
SBS	Chr2	8356695	A-T	Homo	INTERGENIC
SBS	Chr2	11626995	T-A	Homo	INTERGENIC
SBS	Chr3	21914805	C-A	Homo	INTERGENIC
SBS	Chr3	33558592	C-G	Homo	UTR_5_PRIME
SBS	Chr3	37538566	A-T	Hetero	INTERGENIC
SBS	Chr5	28389481	G-C	Hetero	INTRON
SBS	Chr5	30065847	C-A	Hetero	INTERGENIC
SBS	Chr6	7414951	A-T	Hetero	INTRON
SBS	Chr6	20075484	G-T	Hetero	INTERGENIC
SBS	Chr6	26726259	G-A	Hetero	INTERGENIC
SBS	Chr6	26726286	T-A	Hetero	INTERGENIC
SBS	Chr6	30014211	G-A	Hetero	INTERGENIC
SBS	Chr7	3020214	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g037700
SBS	Chr7	13813716	A-G	Hetero	INTERGENIC
SBS	Chr7	24794354	C-T	Homo	INTERGENIC
SBS	Chr7	24796371	C-T	Homo	INTERGENIC
SBS	Chr7	24796391	T-C	Homo	INTERGENIC
SBS	Chr8	14077234	G-C	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr8	19821378	A-G	Hetero	INTRON
SBS	Chr9	6939465	G-A	Hetero	INTERGENIC
SBS	Chr10	5271822	T-C	Hetero	INTERGENIC
SBS	Chr10	9120386	T-C	Hetero	INTERGENIC
SBS	Chr10	13211324	G-A	Hetero	INTERGENIC
SBS	Chr10	15647677	C-A	Hetero	INTERGENIC
SBS	Chr10	17266108	G-A	Homo	INTERGENIC
SBS	Chr11	12330703	C-T	Homo	INTERGENIC
SBS	Chr11	18897141	G-A	Hetero	INTRON
SBS	Chr12	25552349	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	257328	257335	7
Deletion	Chr6	19266826	19266827	1
Deletion	Chr9	22181737	22181740	3
Deletion	Chr8	28111965	28111973	8
Deletion	Chr3	29689001	29735000	45999	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6136188	6532678
Inversion	Chr1	6136196	6532701

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes