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Mutant Information

Mutant Name	FN939-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN939-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6466954 C-T Hetero UTR_3_PRIME
SBS Chr1 13973164 C-T Hetero INTERGENIC
SBS Chr1 14506326 G-T Hetero INTERGENIC
SBS Chr1 20183349 G-T Hetero INTERGENIC
SBS Chr1 26609187 G-A Hetero INTERGENIC
SBS Chr1 43389222 A-C Hetero INTERGENIC
SBS Chr2 4666540 A-G Hetero INTERGENIC
SBS Chr2 29533878 G-A Hetero INTERGENIC
SBS Chr3 4473335 T-A Hetero UTR_3_PRIME
SBS Chr3 12194360 T-A Hetero UTR_3_PRIME
SBS Chr3 12828694 C-T Homo INTRON
SBS Chr3 16602286 C-T Hetero INTERGENIC
SBS Chr3 16602288 C-T Hetero INTERGENIC
SBS Chr3 28032265 C-T Hetero INTERGENIC
SBS Chr3 30431951 C-T Hetero INTRON
SBS Chr3 31938131 G-T Hetero INTRON
SBS Chr3 31938133 C-A Hetero INTRON
SBS Chr3 31938135 A-T Hetero INTRON
SBS Chr4 6463659 G-T Homo INTERGENIC
SBS Chr4 14233661 C-T Homo INTERGENIC
SBS Chr5 4092436 C-T Hetero INTERGENIC
SBS Chr5 16929751 T-A Homo UTR_3_PRIME
SBS Chr5 17885678 C-A Hetero INTRON
SBS Chr6 15245900 C-T Homo INTERGENIC
SBS Chr6 26288564 T-A Hetero INTRON
SBS Chr7 2624278 C-T Homo INTERGENIC
SBS Chr7 4307215 T-A Hetero INTERGENIC
SBS Chr7 10730116 G-A Homo INTERGENIC
SBS Chr7 20431764 C-T Homo INTERGENIC
SBS Chr8 1315154 A-T Homo INTERGENIC
SBS Chr9 334046 T-A Hetero INTERGENIC
SBS Chr9 13346728 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 13346734 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 678710 T-A Homo INTERGENIC
SBS Chr10 11027009 T-A Homo INTERGENIC
SBS Chr10 16730767 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g114100
SBS Chr10 23276262 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g197100
SBS Chr11 4926840 G-C Hetero INTERGENIC
SBS Chr11 17538191 C-A Homo INTERGENIC
SBS Chr11 17538192 C-A Homo INTERGENIC
SBS Chr11 24840315 C-T Homo INTERGENIC
SBS Chr11 24843157 T-C Homo INTERGENIC
SBS Chr11 27248342 C-T Homo INTRON
SBS Chr12 25396914 T-A Hetero UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4149445 4149446 1
Deletion Chr12 7314524 7314525 1
Deletion Chr5 10760257 10760258 1
Deletion Chr9 14589343 14589345 2
Deletion Chr7 15149015 15149024 9
Deletion Chr9 16912451 16912520 69
Deletion Chr7 18726882 18726883 1
Deletion Chr2 19115359 19115365 6
Deletion Chr11 19639404 19639406 2 OsKitaake11g153200
Deletion Chr4 20700245 20700248 3
Deletion Chr11 26187753 26187758 5
Deletion Chr4 28300669 28300670 1 OsKitaake04g210700

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26151787 26151790 2
Insertion Chr7 8412332 8412336 3 OsKitaake07g091200
Insertion Chr8 28306535 28306538 2
Insertion Chr9 20216932 20216935 2
Insertion Chr4 9496147 9496149 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3627771 3658368 OsKitaake03g051600
Inversion Chr3 3627858 3665422
Inversion Chr3 15989423 16001718 OsKitaake03g204600
Inversion Chr3 15989436 16001719 OsKitaake03g204600
Inversion Chr1 23499951 23786668 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6466954	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	13973164	C-T	Hetero	INTERGENIC
SBS	Chr1	14506326	G-T	Hetero	INTERGENIC
SBS	Chr1	20183349	G-T	Hetero	INTERGENIC
SBS	Chr1	26609187	G-A	Hetero	INTERGENIC
SBS	Chr1	43389222	A-C	Hetero	INTERGENIC
SBS	Chr2	4666540	A-G	Hetero	INTERGENIC
SBS	Chr2	29533878	G-A	Hetero	INTERGENIC
SBS	Chr3	4473335	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	12194360	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	12828694	C-T	Homo	INTRON
SBS	Chr3	16602286	C-T	Hetero	INTERGENIC
SBS	Chr3	16602288	C-T	Hetero	INTERGENIC
SBS	Chr3	28032265	C-T	Hetero	INTERGENIC
SBS	Chr3	30431951	C-T	Hetero	INTRON
SBS	Chr3	31938131	G-T	Hetero	INTRON
SBS	Chr3	31938133	C-A	Hetero	INTRON
SBS	Chr3	31938135	A-T	Hetero	INTRON
SBS	Chr4	6463659	G-T	Homo	INTERGENIC
SBS	Chr4	14233661	C-T	Homo	INTERGENIC
SBS	Chr5	4092436	C-T	Hetero	INTERGENIC
SBS	Chr5	16929751	T-A	Homo	UTR_3_PRIME
SBS	Chr5	17885678	C-A	Hetero	INTRON
SBS	Chr6	15245900	C-T	Homo	INTERGENIC
SBS	Chr6	26288564	T-A	Hetero	INTRON
SBS	Chr7	2624278	C-T	Homo	INTERGENIC
SBS	Chr7	4307215	T-A	Hetero	INTERGENIC
SBS	Chr7	10730116	G-A	Homo	INTERGENIC
SBS	Chr7	20431764	C-T	Homo	INTERGENIC
SBS	Chr8	1315154	A-T	Homo	INTERGENIC
SBS	Chr9	334046	T-A	Hetero	INTERGENIC
SBS	Chr9	13346728	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	13346734	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	678710	T-A	Homo	INTERGENIC
SBS	Chr10	11027009	T-A	Homo	INTERGENIC
SBS	Chr10	16730767	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g114100
SBS	Chr10	23276262	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g197100
SBS	Chr11	4926840	G-C	Hetero	INTERGENIC
SBS	Chr11	17538191	C-A	Homo	INTERGENIC
SBS	Chr11	17538192	C-A	Homo	INTERGENIC
SBS	Chr11	24840315	C-T	Homo	INTERGENIC
SBS	Chr11	24843157	T-C	Homo	INTERGENIC
SBS	Chr11	27248342	C-T	Homo	INTRON
SBS	Chr12	25396914	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4149445	4149446	1
Deletion	Chr12	7314524	7314525	1
Deletion	Chr5	10760257	10760258	1
Deletion	Chr9	14589343	14589345	2
Deletion	Chr7	15149015	15149024	9
Deletion	Chr9	16912451	16912520	69
Deletion	Chr7	18726882	18726883	1
Deletion	Chr2	19115359	19115365	6
Deletion	Chr11	19639404	19639406	2	OsKitaake11g153200
Deletion	Chr4	20700245	20700248	3
Deletion	Chr11	26187753	26187758	5
Deletion	Chr4	28300669	28300670	1	OsKitaake04g210700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3627771	3658368	OsKitaake03g051600
Inversion	Chr3	3627858	3665422
Inversion	Chr3	15989423	16001718	OsKitaake03g204600
Inversion	Chr3	15989436	16001719	OsKitaake03g204600
Inversion	Chr1	23499951	23786668	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes