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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN951-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN951-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5345331 C-T Homo INTERGENIC
SBS Chr1 12862970 C-A Homo INTERGENIC
SBS Chr1 16671529 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g177400
SBS Chr1 19196148 G-A Homo INTERGENIC
SBS Chr1 19881589 G-A Homo INTERGENIC
SBS Chr1 21792619 T-C Homo INTERGENIC
SBS Chr1 25444941 C-T Hetero INTERGENIC
SBS Chr1 25664619 C-T Hetero INTERGENIC
SBS Chr1 25664620 C-T Hetero INTERGENIC
SBS Chr1 37464603 A-G Hetero INTERGENIC
SBS Chr2 12321302 C-A Hetero INTERGENIC
SBS Chr2 20459338 A-C Hetero INTERGENIC
SBS Chr3 16151309 C-T Hetero INTERGENIC
SBS Chr3 34976015 C-G Homo INTERGENIC
SBS Chr3 35410395 C-G Hetero INTERGENIC
SBS Chr4 27725807 C-T Hetero INTERGENIC
SBS Chr5 2161321 A-C Homo INTERGENIC
SBS Chr5 9428454 C-A Hetero INTERGENIC
SBS Chr5 14073149 T-C Homo INTERGENIC
SBS Chr5 20597004 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g164200
SBS Chr5 28489816 A-T Hetero UTR_3_PRIME
SBS Chr5 29395707 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g279200
SBS Chr5 29674858 G-A Hetero UTR_3_PRIME
SBS Chr5 29674859 G-A Hetero UTR_3_PRIME
SBS Chr5 29674864 A-C Hetero UTR_3_PRIME
SBS Chr6 4598498 G-A Hetero INTERGENIC
SBS Chr6 4797120 A-G Hetero INTERGENIC
SBS Chr6 4797124 A-G Hetero INTERGENIC
SBS Chr6 6444586 T-C Hetero INTERGENIC
SBS Chr7 7887973 T-C Hetero INTRON
SBS Chr7 22578968 G-T Hetero INTRON
SBS Chr7 28583128 C-T Hetero INTERGENIC
SBS Chr8 5948282 G-A Hetero INTRON
SBS Chr8 9656144 G-A Homo INTERGENIC
SBS Chr8 14086618 C-T Homo INTERGENIC
SBS Chr9 21793683 C-A Homo INTERGENIC
SBS Chr9 21793684 C-T Homo INTERGENIC
SBS Chr10 2898428 G-A Hetero INTERGENIC
SBS Chr10 20020517 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 7673074 A-C Homo INTERGENIC
SBS Chr12 19184332 G-T Homo INTERGENIC
SBS Chr12 25264024 A-C Homo INTERGENIC
SBS Chr12 25320880 C-T Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 127061 127063 2 OsKitaake04g000500
Deletion Chr7 1733367 1733369 2
Deletion Chr8 9517532 9517533 1
Deletion Chr8 10608777 10608779 2
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr1 11142440 11142443 3
Deletion Chr3 11938494 11938496 2
Deletion Chr12 13394712 13394713 1
Deletion Chr2 13817486 13817651 165
Deletion Chr5 13906565 13906568 3
Deletion Chr6 15851245 15851249 4
Deletion Chr6 16016528 16016531 3
Deletion Chr3 20043928 20044236 308
Deletion Chr5 21136001 21176000 39999 5
Deletion Chr1 21849001 21965000 115999 9
Deletion Chr8 25836075 25836076 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 25971577 25971581 3
Insertion Chr8 26682322 26682325 2
Insertion Chr8 28906503 28906511 7
Insertion Chr8 1784987 1784989 1
Insertion Chr9 14992284 14992286 1
Insertion Chr11 25162046 25162048 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1421354 Chr10 20339491 OsKitaake10g154900
Translocation Chr11 1422228 Chr10 20339474 OsKitaake10g154900
Translocation Chr6 4962455 Chr5 21176390 OsKitaake06g066800
Translocation Chr8 21550532 Chr4 31069423 OsKitaake04g241700
Translocation Chr8 21550534 Chr4 31068342 OsKitaake04g241600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5345331	C-T	Homo	INTERGENIC
SBS	Chr1	12862970	C-A	Homo	INTERGENIC
SBS	Chr1	16671529	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g177400
SBS	Chr1	19196148	G-A	Homo	INTERGENIC
SBS	Chr1	19881589	G-A	Homo	INTERGENIC
SBS	Chr1	21792619	T-C	Homo	INTERGENIC
SBS	Chr1	25444941	C-T	Hetero	INTERGENIC
SBS	Chr1	25664619	C-T	Hetero	INTERGENIC
SBS	Chr1	25664620	C-T	Hetero	INTERGENIC
SBS	Chr1	37464603	A-G	Hetero	INTERGENIC
SBS	Chr2	12321302	C-A	Hetero	INTERGENIC
SBS	Chr2	20459338	A-C	Hetero	INTERGENIC
SBS	Chr3	16151309	C-T	Hetero	INTERGENIC
SBS	Chr3	34976015	C-G	Homo	INTERGENIC
SBS	Chr3	35410395	C-G	Hetero	INTERGENIC
SBS	Chr4	27725807	C-T	Hetero	INTERGENIC
SBS	Chr5	2161321	A-C	Homo	INTERGENIC
SBS	Chr5	9428454	C-A	Hetero	INTERGENIC
SBS	Chr5	14073149	T-C	Homo	INTERGENIC
SBS	Chr5	20597004	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g164200
SBS	Chr5	28489816	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	29395707	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g279200
SBS	Chr5	29674858	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	29674859	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	29674864	A-C	Hetero	UTR_3_PRIME
SBS	Chr6	4598498	G-A	Hetero	INTERGENIC
SBS	Chr6	4797120	A-G	Hetero	INTERGENIC
SBS	Chr6	4797124	A-G	Hetero	INTERGENIC
SBS	Chr6	6444586	T-C	Hetero	INTERGENIC
SBS	Chr7	7887973	T-C	Hetero	INTRON
SBS	Chr7	22578968	G-T	Hetero	INTRON
SBS	Chr7	28583128	C-T	Hetero	INTERGENIC
SBS	Chr8	5948282	G-A	Hetero	INTRON
SBS	Chr8	9656144	G-A	Homo	INTERGENIC
SBS	Chr8	14086618	C-T	Homo	INTERGENIC
SBS	Chr9	21793683	C-A	Homo	INTERGENIC
SBS	Chr9	21793684	C-T	Homo	INTERGENIC
SBS	Chr10	2898428	G-A	Hetero	INTERGENIC
SBS	Chr10	20020517	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	7673074	A-C	Homo	INTERGENIC
SBS	Chr12	19184332	G-T	Homo	INTERGENIC
SBS	Chr12	25264024	A-C	Homo	INTERGENIC
SBS	Chr12	25320880	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	127061	127063	2	OsKitaake04g000500
Deletion	Chr7	1733367	1733369	2
Deletion	Chr8	9517532	9517533	1
Deletion	Chr8	10608777	10608779	2
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr1	11142440	11142443	3
Deletion	Chr3	11938494	11938496	2
Deletion	Chr12	13394712	13394713	1
Deletion	Chr2	13817486	13817651	165
Deletion	Chr5	13906565	13906568	3
Deletion	Chr6	15851245	15851249	4
Deletion	Chr6	16016528	16016531	3
Deletion	Chr3	20043928	20044236	308
Deletion	Chr5	21136001	21176000	39999	5
Deletion	Chr1	21849001	21965000	115999	9
Deletion	Chr8	25836075	25836076	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1421354	Chr10	20339491	OsKitaake10g154900
Translocation	Chr11	1422228	Chr10	20339474	OsKitaake10g154900
Translocation	Chr6	4962455	Chr5	21176390	OsKitaake06g066800
Translocation	Chr8	21550532	Chr4	31069423	OsKitaake04g241700
Translocation	Chr8	21550534	Chr4	31068342	OsKitaake04g241600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes