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Mutant Information 

Mutant NameFN957-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN957-S Alignment File
Seed Availability Yes [Order Seeds]
Phenotype
  • TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%)
  • TO:0000207 (Plant height) = Normal (Between 75% and 125%)
  • TO:0000445 (Seed Number) = Normal (Between 75% and 125%)
  • TO:0000639 (Seed fertility) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Phenotype Changes
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Variant Information 

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr121023953T-CHeteroINTERGENIC
SBS  Chr124935853C-THomoINTERGENIC
SBS  Chr135993220G-AHomoNON_SYNONYMOUS_CODINGOsKitaake01g381300
SBS  Chr138449706C-THomoINTERGENIC
SBS  Chr210426621C-THeteroSYNONYMOUS_CODING
SBS  Chr221101424A-CHeteroUTR_3_PRIME
SBS  Chr228367178A-GHeteroINTERGENIC
SBS  Chr37306189C-THomoINTRON
SBS  Chr39220751A-THeteroINTERGENIC
SBS  Chr316817679C-AHeteroINTERGENIC
SBS  Chr325479357G-THeteroUTR_5_PRIME
SBS  Chr331305442C-THomoINTRON
SBS  Chr417939382G-AHomoINTERGENIC
SBS  Chr434736035C-THeteroINTERGENIC
SBS  Chr52219375A-GHomoUTR_3_PRIME
SBS  Chr54257109C-AHeteroINTERGENIC
SBS  Chr55080752G-AHomoUTR_5_PRIME
SBS  Chr512814724G-AHeteroINTERGENIC
SBS  Chr520667354C-THomoINTERGENIC
SBS  Chr619868858C-THeteroINTERGENIC
SBS  Chr629900896T-CHomoINTERGENIC
SBS  Chr73399788G-AHeteroINTRON
SBS  Chr78476191A-GHomoSYNONYMOUS_CODING
SBS  Chr718044876C-AHomoINTRON
SBS  Chr726802485G-AHomoINTERGENIC
SBS  Chr726921277G-AHomoUTR_3_PRIME
SBS  Chr89866263A-GHeteroINTRON
SBS  Chr819432525A-THomoINTERGENIC
SBS  Chr827893889C-THeteroINTRON
SBS  Chr93907507C-THomoINTERGENIC
SBS  Chr97869602A-GHomoNON_SYNONYMOUS_CODINGOsKitaake09g044700
SBS  Chr910199821C-AHeteroINTERGENIC
SBS  Chr918414640T-AHeteroINTRON
SBS  Chr107363955T-AHeteroINTERGENIC
SBS  Chr107363956T-AHeteroINTERGENIC
SBS  Chr107363958G-AHeteroINTERGENIC
SBS  Chr1013279210G-AHeteroINTERGENIC
SBS  Chr1014549724A-THeteroINTERGENIC
SBS  Chr1111772963T-CHeteroINTERGENIC
SBS  Chr1113423829C-AHomoINTERGENIC
SBS  Chr1129547310G-AHeteroINTERGENIC
SBS  Chr121657096C-THeteroNON_SYNONYMOUS_CODINGOsKitaake12g025100
SBS  Chr121657097A-THeteroNON_SYNONYMOUS_CODINGOsKitaake12g025100
SBS  Chr1221056712G-AHomoINTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr618326183271
Deletion  Chr53710814371082511
Deletion  Chr6607898460789906OsKitaake06g080100
Deletion  Chr129899954989996713
Deletion  Chr213844476138444771
Deletion  Chr1017010168170101691
Deletion  Chr819954741199547432
Deletion  Chr620514317205143192
Deletion  Chr223550812235508142
Deletion  Chr4240997242409973713OsKitaake04g154100
Deletion  Chr725221872252218764
Deletion  Chr627346717273467181OsKitaake06g246400

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr124602667246026702
Insertion  Chr221948332219483352
Insertion  Chr227077297270773002
Insertion  Chr3392452439245272
Insertion  Chr3966069196606942
Insertion  Chr6587847758784802
Insertion  Chr6789082778908302
Insertion  Chr6832441883244212
Insertion  Chr912106969121069722
Insertion  Chr615750191157501931
Insertion  Chr9275447627544781

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr32508789825651527
Inversion  Chr32508790225651530