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Mutant Information |
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Mutant Name | FN957-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN957-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Phenotype Changes (Hover to Zoom-In) | ![]()
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Variant Information |
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Single base substitutions: 44
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 21023953 | T-C | Hetero | INTERGENIC | |
SBS | Chr1 | 24935853 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 35993220 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g381300 |
SBS | Chr1 | 38449706 | C-T | Homo | INTERGENIC | |
SBS | Chr2 | 10426621 | C-T | Hetero | SYNONYMOUS_CODING | |
SBS | Chr2 | 21101424 | A-C | Hetero | UTR_3_PRIME | |
SBS | Chr2 | 28367178 | A-G | Hetero | INTERGENIC | |
SBS | Chr3 | 7306189 | C-T | Homo | INTRON | |
SBS | Chr3 | 9220751 | A-T | Hetero | INTERGENIC | |
SBS | Chr3 | 16817679 | C-A | Hetero | INTERGENIC | |
SBS | Chr3 | 25479357 | G-T | Hetero | UTR_5_PRIME | |
SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
SBS | Chr4 | 17939382 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 34736035 | C-T | Hetero | INTERGENIC | |
SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
SBS | Chr5 | 4257109 | C-A | Hetero | INTERGENIC | |
SBS | Chr5 | 5080752 | G-A | Homo | UTR_5_PRIME | |
SBS | Chr5 | 12814724 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 20667354 | C-T | Homo | INTERGENIC | |
SBS | Chr6 | 19868858 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 29900896 | T-C | Homo | INTERGENIC | |
SBS | Chr7 | 3399788 | G-A | Hetero | INTRON | |
SBS | Chr7 | 8476191 | A-G | Homo | SYNONYMOUS_CODING | |
SBS | Chr7 | 18044876 | C-A | Homo | INTRON | |
SBS | Chr7 | 26802485 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 26921277 | G-A | Homo | UTR_3_PRIME | |
SBS | Chr8 | 9866263 | A-G | Hetero | INTRON | |
SBS | Chr8 | 19432525 | A-T | Homo | INTERGENIC | |
SBS | Chr8 | 27893889 | C-T | Hetero | INTRON | |
SBS | Chr9 | 3907507 | C-T | Homo | INTERGENIC | |
SBS | Chr9 | 7869602 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g044700 |
SBS | Chr9 | 10199821 | C-A | Hetero | INTERGENIC | |
SBS | Chr9 | 18414640 | T-A | Hetero | INTRON | |
SBS | Chr10 | 7363955 | T-A | Hetero | INTERGENIC | |
SBS | Chr10 | 7363956 | T-A | Hetero | INTERGENIC | |
SBS | Chr10 | 7363958 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 13279210 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 14549724 | A-T | Hetero | INTERGENIC | |
SBS | Chr11 | 11772963 | T-C | Hetero | INTERGENIC | |
SBS | Chr11 | 13423829 | C-A | Homo | INTERGENIC | |
SBS | Chr11 | 29547310 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 1657096 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g025100 |
SBS | Chr12 | 1657097 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g025100 |
SBS | Chr12 | 21056712 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr6 | 18326 | 18327 | 1 | |
Deletion | Chr5 | 3710814 | 3710825 | 11 | |
Deletion | Chr6 | 6078984 | 6078990 | 6 | OsKitaake06g080100 |
Deletion | Chr12 | 9899954 | 9899967 | 13 | |
Deletion | Chr2 | 13844476 | 13844477 | 1 | |
Deletion | Chr10 | 17010168 | 17010169 | 1 | |
Deletion | Chr8 | 19954741 | 19954743 | 2 | |
Deletion | Chr6 | 20514317 | 20514319 | 2 | |
Deletion | Chr2 | 23550812 | 23550814 | 2 | |
Deletion | Chr4 | 24099724 | 24099737 | 13 | OsKitaake04g154100 |
Deletion | Chr7 | 25221872 | 25221876 | 4 | |
Deletion | Chr6 | 27346717 | 27346718 | 1 | OsKitaake06g246400 |
Insertions: 11
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 25087898 | 25651527 | |
Inversion | Chr3 | 25087902 | 25651530 |