Search Kitaake
Mutant Information |
---|
Mutant Name | FN978-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN978-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
SBS | Chr1 | 7316544 | T-C | Homo | INTERGENIC | |
SBS | Chr1 | 10738426 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 22797581 | T-A | Hetero | INTERGENIC | |
SBS | Chr2 | 4182161 | C-T | Homo | INTERGENIC | |
SBS | Chr2 | 7905923 | A-T | Homo | INTERGENIC | |
SBS | Chr2 | 19449394 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g190600 |
SBS | Chr2 | 31809371 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g323900 |
SBS | Chr2 | 31811270 | A-T | Hetero | UTR_3_PRIME | |
SBS | Chr2 | 32871548 | C-A | Hetero | INTERGENIC | |
SBS | Chr2 | 33421773 | T-G | Hetero | INTERGENIC | |
SBS | Chr2 | 35770046 | T-C | Hetero | INTRON | |
SBS | Chr3 | 16546623 | T-C | Homo | INTERGENIC | |
SBS | Chr3 | 17636243 | T-C | Homo | INTERGENIC | |
SBS | Chr3 | 19704901 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 33644885 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 34652454 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g377100 |
SBS | Chr3 | 34652455 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g377100 |
SBS | Chr4 | 28145480 | G-T | Hetero | INTERGENIC | |
SBS | Chr4 | 33714881 | G-A | Hetero | INTRON | |
SBS | Chr5 | 2277074 | A-G | Homo | INTERGENIC | |
SBS | Chr6 | 2663243 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 4634077 | G-C | Hetero | INTRON | |
SBS | Chr6 | 11877469 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 16540804 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 16540805 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 20038403 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 24213544 | T-A | Hetero | INTERGENIC | |
SBS | Chr6 | 27663863 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 3697707 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 5838423 | C-T | Hetero | INTRON | |
SBS | Chr7 | 7050537 | T-C | Hetero | INTERGENIC | |
SBS | Chr7 | 22481985 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 25713424 | G-A | Homo | INTERGENIC | |
SBS | Chr8 | 12749833 | C-T | Hetero | INTERGENIC | |
SBS | Chr9 | 11295226 | C-G | Hetero | INTERGENIC | |
SBS | Chr9 | 15203083 | A-G | Homo | INTERGENIC | |
SBS | Chr10 | 1759020 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 19712447 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g146000 |
SBS | Chr11 | 17923835 | A-C | Hetero | INTERGENIC | |
SBS | Chr11 | 24832250 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 337977 | G-T | Hetero | INTRON | |
SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr11 | 1488752 | 1488757 | 5 | |
Deletion | Chr10 | 1818203 | 1818211 | 8 | |
Deletion | Chr4 | 2387553 | 2387560 | 7 | |
Deletion | Chr1 | 5098305 | 5098316 | 11 | |
Deletion | Chr1 | 5195279 | 5195286 | 7 | |
Deletion | Chr2 | 12471850 | 12471876 | 26 | |
Deletion | Chr8 | 14993053 | 14993061 | 8 | |
Deletion | Chr9 | 15278321 | 15278322 | 1 | |
Deletion | Chr3 | 16414443 | 16414460 | 17 | |
Deletion | Chr3 | 16696217 | 16696227 | 10 | |
Deletion | Chr12 | 18474001 | 18491000 | 16999 | 5 |
Deletion | Chr11 | 19391281 | 19391284 | 3 | |
Deletion | Chr5 | 20029931 | 20029942 | 11 | OsKitaake05g159300 |
Deletion | Chr10 | 20985268 | 20985288 | 20 | |
Deletion | Chr1 | 21231019 | 21231029 | 10 | |
Deletion | Chr5 | 23617562 | 23617567 | 5 | |
Deletion | Chr12 | 25849689 | 25849696 | 7 | |
Deletion | Chr3 | 25887752 | 25887753 | 1 | |
Deletion | Chr5 | 26378043 | 26378046 | 3 | OsKitaake05g233100 |
Deletion | Chr3 | 30018001 | 30050000 | 31999 | |
Deletion | Chr4 | 34374001 | 34519000 | 144999 | 24 |
Deletion | Chr2 | 34988283 | 34988286 | 3 | |
Deletion | Chr2 | 36396967 | 36396976 | 9 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr3 | 13799627 | 13799629 | 1 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr1 | 7500886 | 7929743 | OsKitaake01g093900 |
Inversion | Chr1 | 7500898 | 7929767 | 2 |
Inversion | Chr1 | 10738649 | 11491498 | |
Inversion | Chr8 | 21354391 | 21621108 | 2 |
Inversion | Chr8 | 21354521 | 21621113 | 2 |
Inversion | Chr3 | 30024352 | 30174678 | |
Inversion | Chr3 | 30045880 | 30174679 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr9 | 1932621 | Chr6 | 24872628 |