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Mutant Information 

Mutant NameFN978-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN978-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr11434964C-AHomoINTERGENIC
SBS  Chr17316544T-CHomoINTERGENIC
SBS  Chr110738426C-THomoINTERGENIC
SBS  Chr122797581T-AHeteroINTERGENIC
SBS  Chr24182161C-THomoINTERGENIC
SBS  Chr27905923A-THomoINTERGENIC
SBS  Chr219449394A-THomoNON_SYNONYMOUS_CODINGOsKitaake02g190600
SBS  Chr231809371G-AHeteroNON_SYNONYMOUS_CODINGOsKitaake02g323900
SBS  Chr231811270A-THeteroUTR_3_PRIME
SBS  Chr232871548C-AHeteroINTERGENIC
SBS  Chr233421773T-GHeteroINTERGENIC
SBS  Chr235770046T-CHeteroINTRON
SBS  Chr316546623T-CHomoINTERGENIC
SBS  Chr317636243T-CHomoINTERGENIC
SBS  Chr319704901G-AHomoINTERGENIC
SBS  Chr333644885C-THomoINTERGENIC
SBS  Chr334652454A-THeteroNON_SYNONYMOUS_CODINGOsKitaake03g377100
SBS  Chr334652455A-THeteroNON_SYNONYMOUS_CODINGOsKitaake03g377100
SBS  Chr428145480G-THeteroINTERGENIC
SBS  Chr433714881G-AHeteroINTRON
SBS  Chr52277074A-GHomoINTERGENIC
SBS  Chr62663243C-THeteroINTERGENIC
SBS  Chr64634077G-CHeteroINTRON
SBS  Chr611877469C-AHeteroINTERGENIC
SBS  Chr616540804C-THeteroINTERGENIC
SBS  Chr616540805C-THeteroINTERGENIC
SBS  Chr620038403T-AHeteroINTERGENIC
SBS  Chr624213544T-AHeteroINTERGENIC
SBS  Chr627663863C-THeteroINTERGENIC
SBS  Chr73697707C-THeteroINTERGENIC
SBS  Chr75838423C-THeteroINTRON
SBS  Chr77050537T-CHeteroINTERGENIC
SBS  Chr722481985G-AHeteroINTERGENIC
SBS  Chr725713424G-AHomoINTERGENIC
SBS  Chr812749833C-THeteroINTERGENIC
SBS  Chr911295226C-GHeteroINTERGENIC
SBS  Chr915203083A-GHomoINTERGENIC
SBS  Chr101759020G-AHeteroINTERGENIC
SBS  Chr1019712447C-THomoNON_SYNONYMOUS_CODINGOsKitaake10g146000
SBS  Chr1117923835A-CHeteroINTERGENIC
SBS  Chr1124832250G-AHeteroINTERGENIC
SBS  Chr12337977G-THeteroINTRON
SBS  Chr121981510C-THomoINTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr11148875214887575
Deletion  Chr10181820318182118
Deletion  Chr4238755323875607
Deletion  Chr15098305509831611
Deletion  Chr1519527951952867
Deletion  Chr2124718501247187626
Deletion  Chr814993053149930618
Deletion  Chr915278321152783221
Deletion  Chr3164144431641446017
Deletion  Chr3166962171669622710
Deletion  Chr121847400118491000169995
Deletion  Chr1119391281193912843
Deletion  Chr5200299312002994211OsKitaake05g159300
Deletion  Chr10209852682098528820
Deletion  Chr1212310192123102910
Deletion  Chr523617562236175675
Deletion  Chr1225849689258496967
Deletion  Chr325887752258877531
Deletion  Chr526378043263780463OsKitaake05g233100
Deletion  Chr3300180013005000031999
Deletion  Chr4343740013451900014499924
Deletion  Chr234988283349882863
Deletion  Chr236396967363969769

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr313799627137996291

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr175008867929743OsKitaake01g093900
Inversion  Chr1750089879297672
Inversion  Chr11073864911491498
Inversion  Chr821354391216211082
Inversion  Chr821354521216211132
Inversion  Chr33002435230174678
Inversion  Chr33004588030174679

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr91932621Chr624872628