Search Kitaake

Mutant Information

Mutant Name	N1-169-9 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-169-9 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15352309 C-G Hetero INTERGENIC
SBS Chr1 20476104 C-G Hetero INTERGENIC
SBS Chr1 23687371 C-T Hetero INTERGENIC
SBS Chr1 23727003 G-A Hetero INTERGENIC
SBS Chr1 29427413 A-T Hetero INTERGENIC
SBS Chr1 32694971 A-T Homo INTERGENIC
SBS Chr1 42597663 C-T Hetero INTERGENIC
SBS Chr2 28657346 C-T Homo INTERGENIC
SBS Chr2 30458717 A-T Homo SYNONYMOUS_CODING
SBS Chr3 12967649 A-T Hetero INTRON
SBS Chr3 27071850 G-A Hetero INTERGENIC
SBS Chr3 32010501 T-A Homo INTERGENIC
SBS Chr4 7539500 A-G Homo INTERGENIC
SBS Chr4 17012507 A-C Hetero INTERGENIC
SBS Chr4 31659425 G-A Homo UTR_3_PRIME
SBS Chr4 31659426 C-A Homo UTR_3_PRIME
SBS Chr5 3136458 A-T Homo INTERGENIC
SBS Chr5 11454918 G-A Homo INTERGENIC
SBS Chr5 27736468 C-T Homo INTRON
SBS Chr5 27736469 G-A Homo INTRON
SBS Chr6 12955525 T-A Homo INTERGENIC
SBS Chr6 20327187 G-A Homo INTRON
SBS Chr8 509201 C-T Homo INTERGENIC
SBS Chr8 25977114 A-T Homo INTERGENIC
SBS Chr9 5484440 T-A Homo INTERGENIC
SBS Chr9 10912260 A-T Homo INTERGENIC
SBS Chr10 19567459 G-A Homo SYNONYMOUS_CODING
SBS Chr10 19580590 C-G Homo UTR_3_PRIME
SBS Chr11 5396582 T-A Homo INTERGENIC
SBS Chr11 10757463 C-A Homo INTERGENIC
SBS Chr11 16125326 C-A Homo INTERGENIC
SBS Chr11 18997349 G-C Homo INTERGENIC
SBS Chr11 26482651 G-A Homo INTERGENIC
SBS Chr12 12268576 T-A Homo INTERGENIC
SBS Chr12 15515046 A-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3032224 3032390 166 OsKitaake05g035600
Deletion Chr1 4451867 4451952 85
Deletion Chr8 4979658 4979659 1
Deletion Chr4 9480430 9480602 172
Deletion Chr8 10354862 10355077 215
Deletion Chr7 13003084 13003253 169
Deletion Chr7 13724001 13729000 4999
Deletion Chr1 13956728 13956729 1
Deletion Chr10 14644999 14645047 48
Deletion Chr6 14816260 14816262 2
Deletion Chr9 15554838 15554935 97
Deletion Chr6 15750974 15750975 1
Deletion Chr4 17722892 17722893 1
Deletion Chr8 19384133 19384135 2
Deletion Chr4 20202830 20202832 2
Deletion Chr6 20564524 20564534 10
Deletion Chr8 20641971 20642062 91 OsKitaake08g153600
Deletion Chr2 20691705 20691789 84
Deletion Chr11 20885374 20885456 82
Deletion Chr6 21954658 21954659 1
Deletion Chr8 23896996 23896998 2
Deletion Chr6 25050255 25050473 218 OsKitaake06g222100
Deletion Chr5 25759113 25759115 2
Deletion Chr1 27544512 27544514 2
Deletion Chr8 29298701 29299407 706
Deletion Chr5 30250924 30250927 3
Deletion Chr3 35518001 35526000 7999
Deletion Chr1 40156569 40156575 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 20013921 20013923 1
Insertion Chr3 32330345 32330347 1
Insertion Chr5 30215229 30215231 1
Insertion Chr7 13341701 13341703 1
Insertion Chr8 13485807 13485809 1
Insertion Chr11 3383179 3383181 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 4094109 4176193
Inversion Chr8 4094114 4176195
Inversion Chr1 33759873 34048605 OsKitaake01g350400
Inversion Chr1 33831528 34048604 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6915778 Chr2 7350679 OsKitaake02g098100
Translocation Chr5 9622444 Chr1 17997861
Translocation Chr10 13260866 Chr4 9728838
Translocation Chr8 21796490 Chr1 11734836
Translocation Chr9 21920581 Chr4 26505278 OsKitaake04g190400
Translocation Chr9 22209709 Chr4 26505284 OsKitaake04g190400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15352309	C-G	Hetero	INTERGENIC
SBS	Chr1	20476104	C-G	Hetero	INTERGENIC
SBS	Chr1	23687371	C-T	Hetero	INTERGENIC
SBS	Chr1	23727003	G-A	Hetero	INTERGENIC
SBS	Chr1	29427413	A-T	Hetero	INTERGENIC
SBS	Chr1	32694971	A-T	Homo	INTERGENIC
SBS	Chr1	42597663	C-T	Hetero	INTERGENIC
SBS	Chr2	28657346	C-T	Homo	INTERGENIC
SBS	Chr2	30458717	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	12967649	A-T	Hetero	INTRON
SBS	Chr3	27071850	G-A	Hetero	INTERGENIC
SBS	Chr3	32010501	T-A	Homo	INTERGENIC
SBS	Chr4	7539500	A-G	Homo	INTERGENIC
SBS	Chr4	17012507	A-C	Hetero	INTERGENIC
SBS	Chr4	31659425	G-A	Homo	UTR_3_PRIME
SBS	Chr4	31659426	C-A	Homo	UTR_3_PRIME
SBS	Chr5	3136458	A-T	Homo	INTERGENIC
SBS	Chr5	11454918	G-A	Homo	INTERGENIC
SBS	Chr5	27736468	C-T	Homo	INTRON
SBS	Chr5	27736469	G-A	Homo	INTRON
SBS	Chr6	12955525	T-A	Homo	INTERGENIC
SBS	Chr6	20327187	G-A	Homo	INTRON
SBS	Chr8	509201	C-T	Homo	INTERGENIC
SBS	Chr8	25977114	A-T	Homo	INTERGENIC
SBS	Chr9	5484440	T-A	Homo	INTERGENIC
SBS	Chr9	10912260	A-T	Homo	INTERGENIC
SBS	Chr10	19567459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	19580590	C-G	Homo	UTR_3_PRIME
SBS	Chr11	5396582	T-A	Homo	INTERGENIC
SBS	Chr11	10757463	C-A	Homo	INTERGENIC
SBS	Chr11	16125326	C-A	Homo	INTERGENIC
SBS	Chr11	18997349	G-C	Homo	INTERGENIC
SBS	Chr11	26482651	G-A	Homo	INTERGENIC
SBS	Chr12	12268576	T-A	Homo	INTERGENIC
SBS	Chr12	15515046	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3032224	3032390	166	OsKitaake05g035600
Deletion	Chr1	4451867	4451952	85
Deletion	Chr8	4979658	4979659	1
Deletion	Chr4	9480430	9480602	172
Deletion	Chr8	10354862	10355077	215
Deletion	Chr7	13003084	13003253	169
Deletion	Chr7	13724001	13729000	4999
Deletion	Chr1	13956728	13956729	1
Deletion	Chr10	14644999	14645047	48
Deletion	Chr6	14816260	14816262	2
Deletion	Chr9	15554838	15554935	97
Deletion	Chr6	15750974	15750975	1
Deletion	Chr4	17722892	17722893	1
Deletion	Chr8	19384133	19384135	2
Deletion	Chr4	20202830	20202832	2
Deletion	Chr6	20564524	20564534	10
Deletion	Chr8	20641971	20642062	91	OsKitaake08g153600
Deletion	Chr2	20691705	20691789	84
Deletion	Chr11	20885374	20885456	82
Deletion	Chr6	21954658	21954659	1
Deletion	Chr8	23896996	23896998	2
Deletion	Chr6	25050255	25050473	218	OsKitaake06g222100
Deletion	Chr5	25759113	25759115	2
Deletion	Chr1	27544512	27544514	2
Deletion	Chr8	29298701	29299407	706
Deletion	Chr5	30250924	30250927	3
Deletion	Chr3	35518001	35526000	7999
Deletion	Chr1	40156569	40156575	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4094109	4176193
Inversion	Chr8	4094114	4176195
Inversion	Chr1	33759873	34048605	OsKitaake01g350400
Inversion	Chr1	33831528	34048604	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes