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Mutant Information

Mutant Name	W138-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W138-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7680013 A-T Homo INTERGENIC
SBS Chr1 13644616 C-T Hetero INTERGENIC
SBS Chr1 14131929 G-C Hetero INTERGENIC
SBS Chr1 14520224 T-G Homo INTERGENIC
SBS Chr1 22558265 G-A Hetero INTERGENIC
SBS Chr1 33108835 G-A Homo INTERGENIC
SBS Chr1 43780523 G-T Homo INTRON
SBS Chr2 13464275 G-A Homo INTRON
SBS Chr2 14102201 A-G Homo UTR_5_PRIME
SBS Chr3 7514324 G-A Homo INTERGENIC
SBS Chr3 12953249 C-A Homo INTERGENIC
SBS Chr3 25258827 C-T Homo INTERGENIC
SBS Chr3 29059411 G-T Hetero INTERGENIC
SBS Chr4 5625833 G-A Homo INTERGENIC
SBS Chr4 13754985 G-A Homo INTERGENIC
SBS Chr4 31246745 C-T Hetero INTERGENIC
SBS Chr4 34848265 T-C Hetero INTERGENIC
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr5 28998345 G-T Homo INTERGENIC
SBS Chr6 30664602 C-T Hetero INTRON
SBS Chr7 13806001 C-T Homo INTERGENIC
SBS Chr7 18986905 G-A Hetero INTERGENIC
SBS Chr10 14893411 T-C Hetero INTERGENIC
SBS Chr10 16840529 G-T Hetero INTERGENIC
SBS Chr10 16984941 A-G Hetero INTERGENIC
SBS Chr10 18842509 G-A Hetero INTERGENIC
SBS Chr10 22411191 A-G Hetero INTERGENIC
SBS Chr11 8324325 T-C Hetero INTERGENIC
SBS Chr11 13042272 C-G Hetero INTERGENIC
SBS Chr11 14564767 C-A Hetero UTR_3_PRIME
SBS Chr11 17511325 C-G Hetero INTRON
SBS Chr11 18166973 G-T Homo INTRON
SBS Chr11 25833857 G-A Hetero INTERGENIC
SBS Chr12 5285146 C-A Homo INTERGENIC
SBS Chr12 7019398 C-A Homo INTERGENIC
SBS Chr12 26412660 C-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1134829 1134837 8
Deletion Chr12 2743844 2743845 1 OsKitaake12g040800
Deletion Chr8 2793159 2793167 8
Deletion Chr12 4229643 4229753 110
Deletion Chr3 4709398 4709399 1
Deletion Chr1 9244636 9244641 5
Deletion Chr5 11088042 11088044 2
Deletion Chr10 11668385 11668395 10
Deletion Chr2 16106852 16106856 4
Deletion Chr6 17914410 17914413 3
Deletion Chr6 20348341 20348344 3
Deletion Chr9 21243820 21243822 2
Deletion Chr1 22059019 22059020 1
Deletion Chr6 24367633 24367634 1
Deletion Chr6 28008749 28008751 2
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr2 31304040 31304041 1
Deletion Chr1 35072215 35072216 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 4831497 4831500 2
Insertion Chr8 19954741 19954747 5
Insertion Chr5 30228119 30228121 1
Insertion Chr8 22823116 22823118 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 318613 Chr1 33638633 2
Translocation Chr11 318621 Chr1 33651994 OsKitaake11g002800
Translocation Chr11 11226997 Chr5 25905475
Translocation Chr11 11227007 Chr5 25904892

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7680013	A-T	Homo	INTERGENIC
SBS	Chr1	13644616	C-T	Hetero	INTERGENIC
SBS	Chr1	14131929	G-C	Hetero	INTERGENIC
SBS	Chr1	14520224	T-G	Homo	INTERGENIC
SBS	Chr1	22558265	G-A	Hetero	INTERGENIC
SBS	Chr1	33108835	G-A	Homo	INTERGENIC
SBS	Chr1	43780523	G-T	Homo	INTRON
SBS	Chr2	13464275	G-A	Homo	INTRON
SBS	Chr2	14102201	A-G	Homo	UTR_5_PRIME
SBS	Chr3	7514324	G-A	Homo	INTERGENIC
SBS	Chr3	12953249	C-A	Homo	INTERGENIC
SBS	Chr3	25258827	C-T	Homo	INTERGENIC
SBS	Chr3	29059411	G-T	Hetero	INTERGENIC
SBS	Chr4	5625833	G-A	Homo	INTERGENIC
SBS	Chr4	13754985	G-A	Homo	INTERGENIC
SBS	Chr4	31246745	C-T	Hetero	INTERGENIC
SBS	Chr4	34848265	T-C	Hetero	INTERGENIC
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr5	28998345	G-T	Homo	INTERGENIC
SBS	Chr6	30664602	C-T	Hetero	INTRON
SBS	Chr7	13806001	C-T	Homo	INTERGENIC
SBS	Chr7	18986905	G-A	Hetero	INTERGENIC
SBS	Chr10	14893411	T-C	Hetero	INTERGENIC
SBS	Chr10	16840529	G-T	Hetero	INTERGENIC
SBS	Chr10	16984941	A-G	Hetero	INTERGENIC
SBS	Chr10	18842509	G-A	Hetero	INTERGENIC
SBS	Chr10	22411191	A-G	Hetero	INTERGENIC
SBS	Chr11	8324325	T-C	Hetero	INTERGENIC
SBS	Chr11	13042272	C-G	Hetero	INTERGENIC
SBS	Chr11	14564767	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	17511325	C-G	Hetero	INTRON
SBS	Chr11	18166973	G-T	Homo	INTRON
SBS	Chr11	25833857	G-A	Hetero	INTERGENIC
SBS	Chr12	5285146	C-A	Homo	INTERGENIC
SBS	Chr12	7019398	C-A	Homo	INTERGENIC
SBS	Chr12	26412660	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1134829	1134837	8
Deletion	Chr12	2743844	2743845	1	OsKitaake12g040800
Deletion	Chr8	2793159	2793167	8
Deletion	Chr12	4229643	4229753	110
Deletion	Chr3	4709398	4709399	1
Deletion	Chr1	9244636	9244641	5
Deletion	Chr5	11088042	11088044	2
Deletion	Chr10	11668385	11668395	10
Deletion	Chr2	16106852	16106856	4
Deletion	Chr6	17914410	17914413	3
Deletion	Chr6	20348341	20348344	3
Deletion	Chr9	21243820	21243822	2
Deletion	Chr1	22059019	22059020	1
Deletion	Chr6	24367633	24367634	1
Deletion	Chr6	28008749	28008751	2
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr2	31304040	31304041	1
Deletion	Chr1	35072215	35072216	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	318613	Chr1	33638633	2
Translocation	Chr11	318621	Chr1	33651994	OsKitaake11g002800
Translocation	Chr11	11226997	Chr5	25905475
Translocation	Chr11	11227007	Chr5	25904892

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes