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Mutant Information

Mutant Name	W22-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W22-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5061849 C-G Hetero INTERGENIC
SBS Chr1 10003419 G-T Homo INTERGENIC
SBS Chr1 22590894 C-T Homo INTERGENIC
SBS Chr1 40121711 T-C Homo INTERGENIC
SBS Chr2 4015210 C-T Hetero INTERGENIC
SBS Chr2 4286349 T-C Hetero INTERGENIC
SBS Chr2 4836924 C-T Hetero INTERGENIC
SBS Chr2 12474992 G-C Hetero INTERGENIC
SBS Chr2 16200457 G-A Hetero INTERGENIC
SBS Chr2 22386488 G-C Hetero INTERGENIC
SBS Chr2 28081810 C-T Hetero INTERGENIC
SBS Chr3 12264930 A-C Hetero INTERGENIC
SBS Chr3 31791745 G-A Homo INTERGENIC
SBS Chr4 25945858 T-C Homo INTERGENIC
SBS Chr4 32190121 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g256100
SBS Chr5 6993596 T-C Homo INTERGENIC
SBS Chr7 1194980 A-C Homo INTERGENIC
SBS Chr8 5910636 G-A Homo INTERGENIC
SBS Chr9 4674605 T-C Homo INTERGENIC
SBS Chr9 19854710 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g164900
SBS Chr9 22003334 T-A Hetero INTERGENIC
SBS Chr10 13191342 G-A Homo INTERGENIC
SBS Chr10 14052530 G-C Hetero INTERGENIC
SBS Chr11 9616124 T-C Homo SYNONYMOUS_CODING
SBS Chr11 9670422 C-T Hetero INTERGENIC
SBS Chr11 15196751 G-T Homo INTERGENIC
SBS Chr11 29395887 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 12034 A-G Hetero INTERGENIC
SBS Chr12 17221187 C-G Hetero INTERGENIC
SBS Chr12 19508933 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2430265 2430386 121 OsKitaake11g035200
Deletion Chr11 2771936 2771937 1
Deletion Chr2 2941232 2941234 2
Deletion Chr4 4033854 4033864 10
Deletion Chr2 6229850 6229856 6
Deletion Chr5 6785620 6785622 2 OsKitaake05g068400
Deletion Chr5 8607312 8607329 17
Deletion Chr12 10183249 10183250 1
Deletion Chr8 11587067 11587069 2
Deletion Chr7 11736436 11736451 15
Deletion Chr11 12522101 12522266 165
Deletion Chr1 14647815 14647818 3
Deletion Chr9 18489749 18489750 1
Deletion Chr4 19310077 19310079 2
Deletion Chr8 20549870 20549872 2
Deletion Chr8 28165900 28165910 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 23426614 23426617 2
Insertion Chr9 9805991 9805994 2
Insertion Chr10 23114439 23114442 2
Insertion Chr1 25385548 25385551 2
Insertion Chr8 13240636 13240647 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5061849	C-G	Hetero	INTERGENIC
SBS	Chr1	10003419	G-T	Homo	INTERGENIC
SBS	Chr1	22590894	C-T	Homo	INTERGENIC
SBS	Chr1	40121711	T-C	Homo	INTERGENIC
SBS	Chr2	4015210	C-T	Hetero	INTERGENIC
SBS	Chr2	4286349	T-C	Hetero	INTERGENIC
SBS	Chr2	4836924	C-T	Hetero	INTERGENIC
SBS	Chr2	12474992	G-C	Hetero	INTERGENIC
SBS	Chr2	16200457	G-A	Hetero	INTERGENIC
SBS	Chr2	22386488	G-C	Hetero	INTERGENIC
SBS	Chr2	28081810	C-T	Hetero	INTERGENIC
SBS	Chr3	12264930	A-C	Hetero	INTERGENIC
SBS	Chr3	31791745	G-A	Homo	INTERGENIC
SBS	Chr4	25945858	T-C	Homo	INTERGENIC
SBS	Chr4	32190121	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g256100
SBS	Chr5	6993596	T-C	Homo	INTERGENIC
SBS	Chr7	1194980	A-C	Homo	INTERGENIC
SBS	Chr8	5910636	G-A	Homo	INTERGENIC
SBS	Chr9	4674605	T-C	Homo	INTERGENIC
SBS	Chr9	19854710	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g164900
SBS	Chr9	22003334	T-A	Hetero	INTERGENIC
SBS	Chr10	13191342	G-A	Homo	INTERGENIC
SBS	Chr10	14052530	G-C	Hetero	INTERGENIC
SBS	Chr11	9616124	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr11	9670422	C-T	Hetero	INTERGENIC
SBS	Chr11	15196751	G-T	Homo	INTERGENIC
SBS	Chr11	29395887	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12034	A-G	Hetero	INTERGENIC
SBS	Chr12	17221187	C-G	Hetero	INTERGENIC
SBS	Chr12	19508933	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2430265	2430386	121	OsKitaake11g035200
Deletion	Chr11	2771936	2771937	1
Deletion	Chr2	2941232	2941234	2
Deletion	Chr4	4033854	4033864	10
Deletion	Chr2	6229850	6229856	6
Deletion	Chr5	6785620	6785622	2	OsKitaake05g068400
Deletion	Chr5	8607312	8607329	17
Deletion	Chr12	10183249	10183250	1
Deletion	Chr8	11587067	11587069	2
Deletion	Chr7	11736436	11736451	15
Deletion	Chr11	12522101	12522266	165
Deletion	Chr1	14647815	14647818	3
Deletion	Chr9	18489749	18489750	1
Deletion	Chr4	19310077	19310079	2
Deletion	Chr8	20549870	20549872	2
Deletion	Chr8	28165900	28165910	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes