Search Kitaake

Mutant Information

Mutant Name	W23-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W23-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4304296 T-G Homo UTR_3_PRIME
SBS Chr1 35245881 C-T Hetero INTERGENIC
SBS Chr2 6962410 C-T Hetero INTERGENIC
SBS Chr2 17888768 T-A Homo INTERGENIC
SBS Chr3 5878538 A-G Hetero INTERGENIC
SBS Chr3 8263006 G-A Hetero INTERGENIC
SBS Chr3 10121583 G-A Hetero INTERGENIC
SBS Chr3 11852136 C-T Hetero UTR_5_PRIME
SBS Chr3 20440724 T-C Homo INTERGENIC
SBS Chr3 24422410 A-G Homo INTERGENIC
SBS Chr4 3268298 G-T Homo INTERGENIC
SBS Chr4 8056177 T-A Homo INTERGENIC
SBS Chr4 10687711 G-A Homo INTERGENIC
SBS Chr4 18395727 T-A Hetero INTRON
SBS Chr4 19337568 T-C Hetero INTERGENIC
SBS Chr4 32837628 C-T Homo INTERGENIC
SBS Chr4 35803888 T-C Hetero UTR_3_PRIME
SBS Chr6 649387 G-A Hetero INTERGENIC
SBS Chr6 11404095 A-T Hetero INTERGENIC
SBS Chr6 17615062 A-G Hetero UTR_3_PRIME
SBS Chr6 24871800 A-T Hetero INTERGENIC
SBS Chr7 13752439 G-A Homo INTERGENIC
SBS Chr7 15181315 T-C Homo INTERGENIC
SBS Chr8 17274750 G-A Homo INTERGENIC
SBS Chr8 20592273 C-A Hetero INTERGENIC
SBS Chr9 7907953 G-A Hetero INTERGENIC
SBS Chr9 16591919 C-T Hetero INTERGENIC
SBS Chr10 7188081 C-T Homo INTERGENIC
SBS Chr10 7188084 C-T Homo INTERGENIC
SBS Chr10 16113600 C-T Hetero INTRON
SBS Chr10 20778360 T-A Hetero INTRON
SBS Chr11 15559337 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3432735 3432740 5
Deletion Chr4 3463818 3463819 1
Deletion Chr1 6077353 6077363 10
Deletion Chr4 8112613 8112615 2
Deletion Chr8 9160435 9160441 6
Deletion Chr10 9684113 9684115 2
Deletion Chr3 10733617 10733623 6
Deletion Chr1 10755094 10755102 8
Deletion Chr3 11395517 11395518 1 OsKitaake03g155900
Deletion Chr1 13705561 13705562 1
Deletion Chr7 15438899 15438910 11
Deletion Chr8 15692942 15692947 5
Deletion Chr10 15762366 15762454 88
Deletion Chr11 16639544 16639545 1
Deletion Chr1 19233113 19233118 5
Deletion Chr7 19892568 19892569 1
Deletion Chr4 22393006 22393008 2
Deletion Chr8 23290122 23290142 20
Deletion Chr6 23507529 23507530 1
Deletion Chr3 28860024 28860026 2
Deletion Chr3 37099521 37099523 2 OsKitaake03g414600
Deletion Chr1 41701226 41701230 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22417055 22417058 2
Insertion Chr12 756993 756996 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3314803 3814462 OsKitaake05g039700
Inversion Chr5 3314805 3814469 OsKitaake05g039700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4304296	T-G	Homo	UTR_3_PRIME
SBS	Chr1	35245881	C-T	Hetero	INTERGENIC
SBS	Chr2	6962410	C-T	Hetero	INTERGENIC
SBS	Chr2	17888768	T-A	Homo	INTERGENIC
SBS	Chr3	5878538	A-G	Hetero	INTERGENIC
SBS	Chr3	8263006	G-A	Hetero	INTERGENIC
SBS	Chr3	10121583	G-A	Hetero	INTERGENIC
SBS	Chr3	11852136	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	20440724	T-C	Homo	INTERGENIC
SBS	Chr3	24422410	A-G	Homo	INTERGENIC
SBS	Chr4	3268298	G-T	Homo	INTERGENIC
SBS	Chr4	8056177	T-A	Homo	INTERGENIC
SBS	Chr4	10687711	G-A	Homo	INTERGENIC
SBS	Chr4	18395727	T-A	Hetero	INTRON
SBS	Chr4	19337568	T-C	Hetero	INTERGENIC
SBS	Chr4	32837628	C-T	Homo	INTERGENIC
SBS	Chr4	35803888	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	649387	G-A	Hetero	INTERGENIC
SBS	Chr6	11404095	A-T	Hetero	INTERGENIC
SBS	Chr6	17615062	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	24871800	A-T	Hetero	INTERGENIC
SBS	Chr7	13752439	G-A	Homo	INTERGENIC
SBS	Chr7	15181315	T-C	Homo	INTERGENIC
SBS	Chr8	17274750	G-A	Homo	INTERGENIC
SBS	Chr8	20592273	C-A	Hetero	INTERGENIC
SBS	Chr9	7907953	G-A	Hetero	INTERGENIC
SBS	Chr9	16591919	C-T	Hetero	INTERGENIC
SBS	Chr10	7188081	C-T	Homo	INTERGENIC
SBS	Chr10	7188084	C-T	Homo	INTERGENIC
SBS	Chr10	16113600	C-T	Hetero	INTRON
SBS	Chr10	20778360	T-A	Hetero	INTRON
SBS	Chr11	15559337	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3432735	3432740	5
Deletion	Chr4	3463818	3463819	1
Deletion	Chr1	6077353	6077363	10
Deletion	Chr4	8112613	8112615	2
Deletion	Chr8	9160435	9160441	6
Deletion	Chr10	9684113	9684115	2
Deletion	Chr3	10733617	10733623	6
Deletion	Chr1	10755094	10755102	8
Deletion	Chr3	11395517	11395518	1	OsKitaake03g155900
Deletion	Chr1	13705561	13705562	1
Deletion	Chr7	15438899	15438910	11
Deletion	Chr8	15692942	15692947	5
Deletion	Chr10	15762366	15762454	88
Deletion	Chr11	16639544	16639545	1
Deletion	Chr1	19233113	19233118	5
Deletion	Chr7	19892568	19892569	1
Deletion	Chr4	22393006	22393008	2
Deletion	Chr8	23290122	23290142	20
Deletion	Chr6	23507529	23507530	1
Deletion	Chr3	28860024	28860026	2
Deletion	Chr3	37099521	37099523	2	OsKitaake03g414600
Deletion	Chr1	41701226	41701230	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3314803	3814462	OsKitaake05g039700
Inversion	Chr5	3314805	3814469	OsKitaake05g039700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes