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Mutant Information

Mutant Name	W247-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W247-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 201255 A-T Hetero INTRON
SBS Chr1 21980311 G-A Hetero INTERGENIC
SBS Chr1 35406307 T-C Homo INTERGENIC
SBS Chr1 36132491 G-T Hetero INTERGENIC
SBS Chr2 11735971 G-C Homo INTERGENIC
SBS Chr2 15613902 G-A Homo INTERGENIC
SBS Chr2 19864813 A-T Hetero INTERGENIC
SBS Chr2 27264275 G-T Hetero INTERGENIC
SBS Chr3 3611135 G-A Hetero INTERGENIC
SBS Chr3 32730707 G-A Hetero UTR_3_PRIME
SBS Chr3 32830509 T-A Homo INTERGENIC
SBS Chr4 6721330 T-C Hetero INTERGENIC
SBS Chr4 7948978 A-G Hetero INTERGENIC
SBS Chr4 18668014 T-C Homo INTERGENIC
SBS Chr4 19186647 G-A Homo INTRON
SBS Chr4 21161322 T-A Homo INTERGENIC
SBS Chr4 23384174 T-G Hetero INTRON
SBS Chr4 28873367 A-T Homo INTERGENIC
SBS Chr5 2623481 G-A Hetero INTRON
SBS Chr5 15744573 G-C Homo INTERGENIC
SBS Chr5 21296451 A-G Homo INTERGENIC
SBS Chr6 4658519 C-A Hetero INTERGENIC
SBS Chr6 9549592 C-T Homo INTERGENIC
SBS Chr7 136081 G-A Homo INTERGENIC
SBS Chr7 10567901 G-A Hetero INTERGENIC
SBS Chr7 19730026 C-T Hetero INTERGENIC
SBS Chr7 25058852 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g225400
SBS Chr8 3756984 G-A Hetero INTRON
SBS Chr8 20745843 C-G Homo INTRON
SBS Chr8 21669882 A-G Hetero INTERGENIC
SBS Chr8 21895029 C-G Hetero INTERGENIC
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr11 340713 C-T Homo INTERGENIC
SBS Chr11 14107317 A-C Homo INTERGENIC
SBS Chr12 14896834 G-A Homo INTERGENIC
SBS Chr12 26146369 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr10 169106 169109 3
Deletion Chr7 934001 1095000 160999 24
Deletion Chr4 1476075 1476076 1
Deletion Chr8 3757080 3757083 3 OsKitaake08g042500
Deletion Chr8 4889806 4890174 368
Deletion Chr6 5702689 5702691 2
Deletion Chr1 7583865 7583869 4 OsKitaake01g095200
Deletion Chr10 9570141 9570142 1
Deletion Chr9 12088505 12088506 1
Deletion Chr8 13321549 13321550 1
Deletion Chr1 13854738 13854743 5
Deletion Chr5 14002806 14002810 4
Deletion Chr8 15172550 15172554 4
Deletion Chr9 15554831 15554928 97
Deletion Chr1 17927814 17927817 3 OsKitaake01g181800
Deletion Chr3 24381679 24381680 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 18104624 18104626 1
Insertion Chr10 11322007 11322011 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 21311038 21830531

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1588094 Chr5 22938648
Translocation Chr12 14397933 Chr10 4916326 OsKitaake10g035600
Translocation Chr3 31029914 Chr2 23949565 OsKitaake03g325700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	201255	A-T	Hetero	INTRON
SBS	Chr1	21980311	G-A	Hetero	INTERGENIC
SBS	Chr1	35406307	T-C	Homo	INTERGENIC
SBS	Chr1	36132491	G-T	Hetero	INTERGENIC
SBS	Chr2	11735971	G-C	Homo	INTERGENIC
SBS	Chr2	15613902	G-A	Homo	INTERGENIC
SBS	Chr2	19864813	A-T	Hetero	INTERGENIC
SBS	Chr2	27264275	G-T	Hetero	INTERGENIC
SBS	Chr3	3611135	G-A	Hetero	INTERGENIC
SBS	Chr3	32730707	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	32830509	T-A	Homo	INTERGENIC
SBS	Chr4	6721330	T-C	Hetero	INTERGENIC
SBS	Chr4	7948978	A-G	Hetero	INTERGENIC
SBS	Chr4	18668014	T-C	Homo	INTERGENIC
SBS	Chr4	19186647	G-A	Homo	INTRON
SBS	Chr4	21161322	T-A	Homo	INTERGENIC
SBS	Chr4	23384174	T-G	Hetero	INTRON
SBS	Chr4	28873367	A-T	Homo	INTERGENIC
SBS	Chr5	2623481	G-A	Hetero	INTRON
SBS	Chr5	15744573	G-C	Homo	INTERGENIC
SBS	Chr5	21296451	A-G	Homo	INTERGENIC
SBS	Chr6	4658519	C-A	Hetero	INTERGENIC
SBS	Chr6	9549592	C-T	Homo	INTERGENIC
SBS	Chr7	136081	G-A	Homo	INTERGENIC
SBS	Chr7	10567901	G-A	Hetero	INTERGENIC
SBS	Chr7	19730026	C-T	Hetero	INTERGENIC
SBS	Chr7	25058852	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g225400
SBS	Chr8	3756984	G-A	Hetero	INTRON
SBS	Chr8	20745843	C-G	Homo	INTRON
SBS	Chr8	21669882	A-G	Hetero	INTERGENIC
SBS	Chr8	21895029	C-G	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr11	340713	C-T	Homo	INTERGENIC
SBS	Chr11	14107317	A-C	Homo	INTERGENIC
SBS	Chr12	14896834	G-A	Homo	INTERGENIC
SBS	Chr12	26146369	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr10	169106	169109	3
Deletion	Chr7	934001	1095000	160999	24
Deletion	Chr4	1476075	1476076	1
Deletion	Chr8	3757080	3757083	3	OsKitaake08g042500
Deletion	Chr8	4889806	4890174	368
Deletion	Chr6	5702689	5702691	2
Deletion	Chr1	7583865	7583869	4	OsKitaake01g095200
Deletion	Chr10	9570141	9570142	1
Deletion	Chr9	12088505	12088506	1
Deletion	Chr8	13321549	13321550	1
Deletion	Chr1	13854738	13854743	5
Deletion	Chr5	14002806	14002810	4
Deletion	Chr8	15172550	15172554	4
Deletion	Chr9	15554831	15554928	97
Deletion	Chr1	17927814	17927817	3	OsKitaake01g181800
Deletion	Chr3	24381679	24381680	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21311038	21830531

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes