Search Kitaake
| Mutant Information |
|---|
| Mutant Name | W252-6-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W252-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5850813 | G-C | Homo | INTRON | |
| SBS | Chr2 | 15425477 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 30866224 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 586895 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 7181819 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19307178 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7614149 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7614151 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17506365 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 30038910 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 205382 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 3116434 | T-G | Hetero | INTRON | |
| SBS | Chr5 | 9419291 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20032328 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 13197509 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18934325 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2087054 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 6233756 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 16756882 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 1962005 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7385246 | T-C | Homo | INTRON | |
| SBS | Chr9 | 16102610 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 2051184 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 5503435 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 4946606 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8900324 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15474481 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19343015 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23566259 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Homo | INTERGENIC |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 2759152 | 2759153 | 1 | |
| Deletion | Chr11 | 4174060 | 4174063 | 3 | |
| Deletion | Chr2 | 7434904 | 7434911 | 7 | |
| Deletion | Chr4 | 7990066 | 7990079 | 13 | |
| Deletion | Chr2 | 8309156 | 8309157 | 1 | |
| Deletion | Chr8 | 10033149 | 10033153 | 4 | |
| Deletion | Chr2 | 10155284 | 10155285 | 1 | OsKitaake02g121901 |
| Deletion | Chr5 | 10846973 | 10846975 | 2 | |
| Deletion | Chr4 | 11011298 | 11011309 | 11 | |
| Deletion | Chr8 | 11271985 | 11271987 | 2 | |
| Deletion | Chr9 | 12258629 | 12258645 | 16 | |
| Deletion | Chr9 | 22334117 | 22334118 | 1 | |
| Deletion | Chr5 | 22455896 | 22455914 | 18 | |
| Deletion | Chr2 | 22777342 | 22777343 | 1 | |
| Deletion | Chr1 | 23001951 | 23001952 | 1 | |
| Deletion | Chr5 | 24958768 | 24958774 | 6 | |
| Deletion | Chr5 | 26588152 | 26588154 | 2 | |
| Deletion | Chr7 | 26860706 | 26860712 | 6 | OsKitaake07g250200 |
| Deletion | Chr8 | 27079714 | 27079716 | 2 | |
| Deletion | Chr1 | 33115442 | 33115448 | 6 | |
| Deletion | Chr2 | 34401503 | 34401504 | 1 | OsKitaake02g357700 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 11349 | 11351 | 1 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 5323001 | Chr2 | 27414168 | |
| Translocation | Chr10 | 5330711 | Chr2 | 24747603 | |
| Translocation | Chr10 | 22485219 | Chr2 | 13972611 | |
| Translocation | Chr10 | 22485224 | Chr2 | 13972448 | OsKitaake02g151100 |