Search Kitaake

Mutant Information

Mutant Name	W276-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W276-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 741391 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g007200
SBS Chr1 5147691 G-A Hetero INTERGENIC
SBS Chr1 8871486 A-G Homo INTERGENIC
SBS Chr1 9045518 T-A Homo INTRON
SBS Chr1 29885314 G-T Homo INTERGENIC
SBS Chr1 32183081 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g325200
SBS Chr2 12371949 G-A Hetero INTERGENIC
SBS Chr2 13484012 G-A Homo INTRON
SBS Chr2 23077405 A-G Hetero INTERGENIC
SBS Chr2 33234050 G-A Homo INTRON
SBS Chr3 10638502 A-T Hetero INTERGENIC
SBS Chr3 18358102 G-T Homo INTERGENIC
SBS Chr3 19591303 C-T Hetero INTERGENIC
SBS Chr3 26963456 G-T Homo INTERGENIC
SBS Chr3 26963457 C-T Homo INTERGENIC
SBS Chr3 31326673 G-A Homo INTERGENIC
SBS Chr3 35902060 G-A Homo INTERGENIC
SBS Chr4 16471006 C-T Hetero INTERGENIC
SBS Chr4 21343366 A-G Homo UTR_3_PRIME
SBS Chr5 22716008 A-G Homo INTERGENIC
SBS Chr5 26284863 G-A Hetero INTERGENIC
SBS Chr6 14526029 C-T Hetero INTERGENIC
SBS Chr6 17779309 G-A Homo INTERGENIC
SBS Chr6 19744480 A-C Homo INTERGENIC
SBS Chr6 19770119 T-G Homo INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 20539609 C-T Hetero INTERGENIC
SBS Chr7 22421906 C-T Homo INTERGENIC
SBS Chr8 17493086 T-A Homo INTERGENIC
SBS Chr8 28627825 C-T Hetero INTERGENIC
SBS Chr8 29298618 C-T Hetero INTERGENIC
SBS Chr9 2193405 T-C Hetero INTERGENIC
SBS Chr10 69617 T-A Homo INTERGENIC
SBS Chr10 1835612 T-C Homo INTERGENIC
SBS Chr10 17956635 C-G Homo INTERGENIC
SBS Chr10 23183939 G-A Homo INTERGENIC
SBS Chr10 23183941 T-C Homo INTERGENIC
SBS Chr10 23756410 T-C Homo INTRON
SBS Chr10 23936485 C-T Homo STOP_GAINED OsKitaake10g207000
SBS Chr10 23936487 G-T Homo NON_SYNONYMOUS_CODING OsKitaake10g207000
SBS Chr11 13950685 A-T Homo INTRON
SBS Chr12 12038597 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4048604 4048606 2
Deletion Chr10 7675173 7675174 1
Deletion Chr9 8561428 8561430 2
Deletion Chr6 11853926 11853931 5
Deletion Chr4 13389533 13389537 4
Deletion Chr2 13708052 13708056 4
Deletion Chr11 13922138 13922153 15
Deletion Chr11 15196593 15196594 1
Deletion Chr6 22052144 22052146 2 OsKitaake06g194200
Deletion Chr1 23874940 23874956 16
Deletion Chr10 23960953 23960959 6
Deletion Chr1 24964606 24964608 2
Deletion Chr7 28346703 28346705 2
Deletion Chr1 31964599 31964610 11
Deletion Chr1 40413672 40413673 1
Deletion Chr1 41545901 41545906 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 176980 176984 3
Insertion Chr5 9054232 9054234 1
Insertion Chr11 12355960 12355962 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	741391	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g007200
SBS	Chr1	5147691	G-A	Hetero	INTERGENIC
SBS	Chr1	8871486	A-G	Homo	INTERGENIC
SBS	Chr1	9045518	T-A	Homo	INTRON
SBS	Chr1	29885314	G-T	Homo	INTERGENIC
SBS	Chr1	32183081	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g325200
SBS	Chr2	12371949	G-A	Hetero	INTERGENIC
SBS	Chr2	13484012	G-A	Homo	INTRON
SBS	Chr2	23077405	A-G	Hetero	INTERGENIC
SBS	Chr2	33234050	G-A	Homo	INTRON
SBS	Chr3	10638502	A-T	Hetero	INTERGENIC
SBS	Chr3	18358102	G-T	Homo	INTERGENIC
SBS	Chr3	19591303	C-T	Hetero	INTERGENIC
SBS	Chr3	26963456	G-T	Homo	INTERGENIC
SBS	Chr3	26963457	C-T	Homo	INTERGENIC
SBS	Chr3	31326673	G-A	Homo	INTERGENIC
SBS	Chr3	35902060	G-A	Homo	INTERGENIC
SBS	Chr4	16471006	C-T	Hetero	INTERGENIC
SBS	Chr4	21343366	A-G	Homo	UTR_3_PRIME
SBS	Chr5	22716008	A-G	Homo	INTERGENIC
SBS	Chr5	26284863	G-A	Hetero	INTERGENIC
SBS	Chr6	14526029	C-T	Hetero	INTERGENIC
SBS	Chr6	17779309	G-A	Homo	INTERGENIC
SBS	Chr6	19744480	A-C	Homo	INTERGENIC
SBS	Chr6	19770119	T-G	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	20539609	C-T	Hetero	INTERGENIC
SBS	Chr7	22421906	C-T	Homo	INTERGENIC
SBS	Chr8	17493086	T-A	Homo	INTERGENIC
SBS	Chr8	28627825	C-T	Hetero	INTERGENIC
SBS	Chr8	29298618	C-T	Hetero	INTERGENIC
SBS	Chr9	2193405	T-C	Hetero	INTERGENIC
SBS	Chr10	69617	T-A	Homo	INTERGENIC
SBS	Chr10	1835612	T-C	Homo	INTERGENIC
SBS	Chr10	17956635	C-G	Homo	INTERGENIC
SBS	Chr10	23183939	G-A	Homo	INTERGENIC
SBS	Chr10	23183941	T-C	Homo	INTERGENIC
SBS	Chr10	23756410	T-C	Homo	INTRON
SBS	Chr10	23936485	C-T	Homo	STOP_GAINED	OsKitaake10g207000
SBS	Chr10	23936487	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g207000
SBS	Chr11	13950685	A-T	Homo	INTRON
SBS	Chr12	12038597	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4048604	4048606	2
Deletion	Chr10	7675173	7675174	1
Deletion	Chr9	8561428	8561430	2
Deletion	Chr6	11853926	11853931	5
Deletion	Chr4	13389533	13389537	4
Deletion	Chr2	13708052	13708056	4
Deletion	Chr11	13922138	13922153	15
Deletion	Chr11	15196593	15196594	1
Deletion	Chr6	22052144	22052146	2	OsKitaake06g194200
Deletion	Chr1	23874940	23874956	16
Deletion	Chr10	23960953	23960959	6
Deletion	Chr1	24964606	24964608	2
Deletion	Chr7	28346703	28346705	2
Deletion	Chr1	31964599	31964610	11
Deletion	Chr1	40413672	40413673	1
Deletion	Chr1	41545901	41545906	5

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes