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Mutant Information

Mutant Name	W42-1-3S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W42-1-3S-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13183017	A-G	Hetero	INTERGENIC
SBS	Chr1	23513460	T-G	Homo	INTERGENIC
SBS	Chr1	31301656	T-C	Homo	INTERGENIC
SBS	Chr2	2118048	G-A	Homo	UTR_3_PRIME
SBS	Chr2	6513301	G-A	Homo	INTERGENIC
SBS	Chr2	14225084	T-A	Hetero	INTERGENIC
SBS	Chr2	14341640	A-G	Hetero	INTERGENIC
SBS	Chr2	21211533	G-A	Hetero	INTERGENIC
SBS	Chr2	31220720	G-C	Hetero	INTERGENIC
SBS	Chr2	35219592	T-A	Hetero	INTERGENIC
SBS	Chr3	3939744	C-T	Homo	INTERGENIC
SBS	Chr3	3939747	G-A	Homo	INTERGENIC
SBS	Chr3	11610158	A-T	Homo	INTERGENIC
SBS	Chr3	19321348	A-G	Homo	INTERGENIC
SBS	Chr4	7283578	A-C	Homo	INTERGENIC
SBS	Chr4	14307784	T-A	Hetero	INTERGENIC
SBS	Chr4	14619403	G-C	Hetero	UTR_3_PRIME
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	17095422	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	18046350	C-G	Hetero	INTERGENIC
SBS	Chr4	20820810	G-T	Hetero	INTERGENIC
SBS	Chr4	27221029	T-G	Hetero	INTERGENIC
SBS	Chr4	34913357	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g292100
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	20041282	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr5	26461528	A-T	Hetero	INTERGENIC
SBS	Chr5	27217864	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	7531143	G-T	Hetero	INTERGENIC
SBS	Chr6	10372725	T-G	Hetero	INTRON
SBS	Chr7	182681	C-T	Hetero	INTERGENIC
SBS	Chr7	1381190	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g019700
SBS	Chr7	4300287	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g054000
SBS	Chr7	9331023	C-T	Homo	INTERGENIC
SBS	Chr8	3003959	A-G	Homo	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	14850231	A-T	Homo	INTERGENIC
SBS	Chr8	22964920	G-C	Hetero	UTR_3_PRIME
SBS	Chr9	22316910	A-T	Hetero	INTERGENIC
SBS	Chr10	142921	C-T	Homo	INTERGENIC
SBS	Chr10	12307395	T-A	Homo	INTERGENIC
SBS	Chr10	15761734	T-A	Hetero	INTERGENIC
SBS	Chr10	16388793	A-T	Homo	INTERGENIC
SBS	Chr11	26034811	A-C	Homo	INTRON
SBS	Chr11	26061432	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g210500
SBS	Chr12	6458879	C-T	Hetero	INTERGENIC
SBS	Chr12	11115886	A-G	Homo	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	86346	86347	1
Deletion	Chr3	223825	223828	3
Deletion	Chr7	3110310	3110321	11
Deletion	Chr3	3767323	3767331	8
Deletion	Chr8	6544285	6544289	4
Deletion	Chr8	6613752	6613753	1
Deletion	Chr2	7149372	7149379	7
Deletion	Chr10	8121320	8121332	12
Deletion	Chr4	10840053	10840056	3
Deletion	Chr4	10906588	10906597	9
Deletion	Chr12	10930682	10930683	1
Deletion	Chr7	13068611	13068612	1
Deletion	Chr7	13486961	13486964	3
Deletion	Chr1	19191946	19191956	10
Deletion	Chr7	20298353	20298370	17
Deletion	Chr11	21177001	21247000	69999	7
Deletion	Chr3	22065138	22065140	2
Deletion	Chr4	22751866	22751880	14
Deletion	Chr1	27049954	27049956	2
Deletion	Chr3	28188051	28188053	2
Deletion	Chr4	29980001	29988000	7999
Deletion	Chr4	35265715	35265722	7
Deletion	Chr2	37072073	37072075	2	OsKitaake02g398400

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr11	4873547	4873550	2
Insertion	Chr2	13865666	13865669	2
Insertion	Chr6	6082	6084	1
Insertion	Chr6	16020336	16020338	1	OsKitaake06g154000

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3475966	4103010	2
Inversion	Chr3	3475974	4103020	2
Inversion	Chr9	16055421	16144148	OsKitaake09g115900
Inversion	Chr9	16055605	16191080	OsKitaake09g116600

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	9238910	Chr1	29437639	OsKitaake05g086300
Translocation	Chr5	9238911	Chr4	29975017	OsKitaake05g086300

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