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Mutant Information

Mutant Name	W423-5-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W423-5-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3268763 C-T Homo UTR_5_PRIME
SBS Chr1 3268764 C-T Homo UTR_5_PRIME
SBS Chr1 16141507 A-T Hetero INTERGENIC
SBS Chr1 29042205 T-G Hetero UTR_5_PRIME
SBS Chr2 1998166 A-G Hetero INTRON
SBS Chr2 8776839 A-C Homo INTERGENIC
SBS Chr2 18433402 T-G Hetero INTERGENIC
SBS Chr3 4012805 A-G Hetero INTERGENIC
SBS Chr3 8151506 C-A Hetero INTERGENIC
SBS Chr3 11577474 C-A Hetero INTERGENIC
SBS Chr3 18417607 G-A Homo INTERGENIC
SBS Chr3 23673827 T-C Homo INTERGENIC
SBS Chr4 17849850 A-T Hetero INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr5 4893059 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 5112970 C-T Hetero INTERGENIC
SBS Chr5 8612301 T-A Hetero INTERGENIC
SBS Chr5 8720154 C-G Hetero INTERGENIC
SBS Chr5 10847296 C-A Hetero INTERGENIC
SBS Chr5 13915624 T-A Hetero INTERGENIC
SBS Chr5 25124608 C-T Homo INTERGENIC
SBS Chr5 27224329 G-A Hetero INTERGENIC
SBS Chr6 10684433 C-T Hetero INTERGENIC
SBS Chr6 23994691 C-T Hetero INTERGENIC
SBS Chr7 9193121 G-A Homo INTERGENIC
SBS Chr7 29205170 T-C Hetero INTERGENIC
SBS Chr8 2279048 T-C Homo INTERGENIC
SBS Chr9 16302639 G-A Hetero INTERGENIC
SBS Chr10 776055 C-T Homo INTERGENIC
SBS Chr10 3743876 T-C Homo INTERGENIC
SBS Chr10 20871280 T-A Homo UTR_3_PRIME
SBS Chr10 22400648 G-A Hetero INTERGENIC
SBS Chr12 12687079 T-G Homo INTERGENIC
SBS Chr12 18086917 T-C Hetero INTERGENIC
SBS Chr12 19834491 A-G Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr10 2225051 2225053 2
Deletion Chr5 5375602 5375673 71
Deletion Chr4 5441273 5441275 2
Deletion Chr12 8270085 8270090 5
Deletion Chr9 8369256 8369257 1
Deletion Chr9 8386459 8386585 126
Deletion Chr5 8520001 8614000 93999 OsKitaake05g082002
Deletion Chr8 9136689 9136705 16
Deletion Chr5 9308001 9493000 184999 8
Deletion Chr10 11737385 11737390 5
Deletion Chr6 12580443 12580445 2
Deletion Chr12 12854151 12854158 7
Deletion Chr4 15277207 15277211 4
Deletion Chr4 15321751 15321753 2
Deletion Chr6 15758778 15758779 1
Deletion Chr10 16378766 16378770 4 OsKitaake10g110700
Deletion Chr10 17663233 17663235 2
Deletion Chr2 17936450 17936451 1
Deletion Chr10 18418471 18418473 2
Deletion Chr11 25242264 25242274 10
Deletion Chr6 26412485 26412487 2 OsKitaake06g237103
Deletion Chr3 26757934 26757938 4
Deletion Chr1 38316938 38316939 1 OsKitaake01g408400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 36904050 36904052 1
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1505114 2300448
Inversion Chr10 1505134 2303400 OsKitaake10g018700
Inversion Chr12 17850529 17852676
Inversion Chr12 17850543 17852682
Inversion Chr2 28177025 28506048

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2300468 Chr5 11351389
Translocation Chr10 2303381 Chr4 2499566 OsKitaake10g018700
Translocation Chr11 15521793 Chr2 28506041
Translocation Chr11 15552151 Chr3 23197258
Translocation Chr3 23198583 Chr2 28177016

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3268763	C-T	Homo	UTR_5_PRIME
SBS	Chr1	3268764	C-T	Homo	UTR_5_PRIME
SBS	Chr1	16141507	A-T	Hetero	INTERGENIC
SBS	Chr1	29042205	T-G	Hetero	UTR_5_PRIME
SBS	Chr2	1998166	A-G	Hetero	INTRON
SBS	Chr2	8776839	A-C	Homo	INTERGENIC
SBS	Chr2	18433402	T-G	Hetero	INTERGENIC
SBS	Chr3	4012805	A-G	Hetero	INTERGENIC
SBS	Chr3	8151506	C-A	Hetero	INTERGENIC
SBS	Chr3	11577474	C-A	Hetero	INTERGENIC
SBS	Chr3	18417607	G-A	Homo	INTERGENIC
SBS	Chr3	23673827	T-C	Homo	INTERGENIC
SBS	Chr4	17849850	A-T	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr5	4893059	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5112970	C-T	Hetero	INTERGENIC
SBS	Chr5	8612301	T-A	Hetero	INTERGENIC
SBS	Chr5	8720154	C-G	Hetero	INTERGENIC
SBS	Chr5	10847296	C-A	Hetero	INTERGENIC
SBS	Chr5	13915624	T-A	Hetero	INTERGENIC
SBS	Chr5	25124608	C-T	Homo	INTERGENIC
SBS	Chr5	27224329	G-A	Hetero	INTERGENIC
SBS	Chr6	10684433	C-T	Hetero	INTERGENIC
SBS	Chr6	23994691	C-T	Hetero	INTERGENIC
SBS	Chr7	9193121	G-A	Homo	INTERGENIC
SBS	Chr7	29205170	T-C	Hetero	INTERGENIC
SBS	Chr8	2279048	T-C	Homo	INTERGENIC
SBS	Chr9	16302639	G-A	Hetero	INTERGENIC
SBS	Chr10	776055	C-T	Homo	INTERGENIC
SBS	Chr10	3743876	T-C	Homo	INTERGENIC
SBS	Chr10	20871280	T-A	Homo	UTR_3_PRIME
SBS	Chr10	22400648	G-A	Hetero	INTERGENIC
SBS	Chr12	12687079	T-G	Homo	INTERGENIC
SBS	Chr12	18086917	T-C	Hetero	INTERGENIC
SBS	Chr12	19834491	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr10	2225051	2225053	2
Deletion	Chr5	5375602	5375673	71
Deletion	Chr4	5441273	5441275	2
Deletion	Chr12	8270085	8270090	5
Deletion	Chr9	8369256	8369257	1
Deletion	Chr9	8386459	8386585	126
Deletion	Chr5	8520001	8614000	93999	OsKitaake05g082002
Deletion	Chr8	9136689	9136705	16
Deletion	Chr5	9308001	9493000	184999	8
Deletion	Chr10	11737385	11737390	5
Deletion	Chr6	12580443	12580445	2
Deletion	Chr12	12854151	12854158	7
Deletion	Chr4	15277207	15277211	4
Deletion	Chr4	15321751	15321753	2
Deletion	Chr6	15758778	15758779	1
Deletion	Chr10	16378766	16378770	4	OsKitaake10g110700
Deletion	Chr10	17663233	17663235	2
Deletion	Chr2	17936450	17936451	1
Deletion	Chr10	18418471	18418473	2
Deletion	Chr11	25242264	25242274	10
Deletion	Chr6	26412485	26412487	2	OsKitaake06g237103
Deletion	Chr3	26757934	26757938	4
Deletion	Chr1	38316938	38316939	1	OsKitaake01g408400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1505114	2300448
Inversion	Chr10	1505134	2303400	OsKitaake10g018700
Inversion	Chr12	17850529	17852676
Inversion	Chr12	17850543	17852682
Inversion	Chr2	28177025	28506048

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes