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Mutant Information

Mutant Name	W426-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W426-1-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20726900 G-A Hetero INTERGENIC
SBS Chr1 32381687 A-T Hetero UTR_3_PRIME
SBS Chr1 39372915 C-T Hetero INTRON
SBS Chr2 4000923 A-G Homo INTERGENIC
SBS Chr2 6472818 A-G Hetero UTR_3_PRIME
SBS Chr2 7989687 G-T Homo INTERGENIC
SBS Chr2 7989688 A-T Homo INTERGENIC
SBS Chr2 8353413 C-T Homo INTERGENIC
SBS Chr2 9621128 T-A Homo UTR_3_PRIME
SBS Chr2 34265583 G-T Hetero INTERGENIC
SBS Chr2 35166395 T-A Homo UTR_3_PRIME
SBS Chr3 3811754 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g053800
SBS Chr3 21443323 G-A Hetero INTERGENIC
SBS Chr3 31738166 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g334600
SBS Chr3 36572558 G-T Hetero INTERGENIC
SBS Chr4 5494560 C-T Homo INTERGENIC
SBS Chr4 16841693 C-T Homo INTERGENIC
SBS Chr5 18776416 C-T Homo INTERGENIC
SBS Chr5 19932686 T-C Homo INTERGENIC
SBS Chr6 1095249 G-T Homo INTERGENIC
SBS Chr6 14295235 G-A Hetero INTERGENIC
SBS Chr6 15082594 C-T Hetero INTERGENIC
SBS Chr6 15432476 C-T Hetero INTERGENIC
SBS Chr6 27134758 A-T Hetero INTRON
SBS Chr7 4236434 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g053500
SBS Chr7 16115713 A-T Hetero INTERGENIC
SBS Chr8 9051166 C-T Hetero INTERGENIC
SBS Chr8 23282204 G-A Homo INTERGENIC
SBS Chr8 23827185 T-C Homo INTERGENIC
SBS Chr9 22046511 A-G Homo INTRON
SBS Chr10 6394961 C-T Homo INTERGENIC
SBS Chr11 6557716 G-A Hetero INTERGENIC
SBS Chr11 26782473 T-A Hetero INTERGENIC
SBS Chr12 6183006 G-A Hetero INTERGENIC
SBS Chr12 13927926 C-T Hetero INTERGENIC
SBS Chr12 16721870 C-T Hetero INTERGENIC
SBS Chr12 21162737 C-T Hetero INTERGENIC
SBS Chr12 24782536 C-T Homo INTERGENIC
SBS Chr12 26189135 C-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1496811 1496814 3
Deletion Chr1 3150701 3150703 2
Deletion Chr7 3459001 3487000 27999 2
Deletion Chr5 6279966 6279968 2
Deletion Chr4 11945010 11945011 1
Deletion Chr10 12026832 12026836 4
Deletion Chr4 14246742 14246750 8
Deletion Chr6 21008814 21008815 1
Deletion Chr10 21287218 21287219 1
Deletion Chr6 23188750 23188751 1
Deletion Chr10 23539072 23539074 2
Deletion Chr4 27954001 27975000 20999 7
Deletion Chr4 28518029 28518036 7
Deletion Chr3 29992603 29992604 1
Deletion Chr3 31854648 31854652 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30692730 30692733 2
Insertion Chr5 14601605 14601608 2
Insertion Chr5 22411876 22411879 2
Insertion Chr12 7334223 7334226 2
Insertion Chr3 19260759 19260763 3
Insertion Chr8 2510172 2510174 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20726900	G-A	Hetero	INTERGENIC
SBS	Chr1	32381687	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	39372915	C-T	Hetero	INTRON
SBS	Chr2	4000923	A-G	Homo	INTERGENIC
SBS	Chr2	6472818	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	7989687	G-T	Homo	INTERGENIC
SBS	Chr2	7989688	A-T	Homo	INTERGENIC
SBS	Chr2	8353413	C-T	Homo	INTERGENIC
SBS	Chr2	9621128	T-A	Homo	UTR_3_PRIME
SBS	Chr2	34265583	G-T	Hetero	INTERGENIC
SBS	Chr2	35166395	T-A	Homo	UTR_3_PRIME
SBS	Chr3	3811754	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g053800
SBS	Chr3	21443323	G-A	Hetero	INTERGENIC
SBS	Chr3	31738166	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g334600
SBS	Chr3	36572558	G-T	Hetero	INTERGENIC
SBS	Chr4	5494560	C-T	Homo	INTERGENIC
SBS	Chr4	16841693	C-T	Homo	INTERGENIC
SBS	Chr5	18776416	C-T	Homo	INTERGENIC
SBS	Chr5	19932686	T-C	Homo	INTERGENIC
SBS	Chr6	1095249	G-T	Homo	INTERGENIC
SBS	Chr6	14295235	G-A	Hetero	INTERGENIC
SBS	Chr6	15082594	C-T	Hetero	INTERGENIC
SBS	Chr6	15432476	C-T	Hetero	INTERGENIC
SBS	Chr6	27134758	A-T	Hetero	INTRON
SBS	Chr7	4236434	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g053500
SBS	Chr7	16115713	A-T	Hetero	INTERGENIC
SBS	Chr8	9051166	C-T	Hetero	INTERGENIC
SBS	Chr8	23282204	G-A	Homo	INTERGENIC
SBS	Chr8	23827185	T-C	Homo	INTERGENIC
SBS	Chr9	22046511	A-G	Homo	INTRON
SBS	Chr10	6394961	C-T	Homo	INTERGENIC
SBS	Chr11	6557716	G-A	Hetero	INTERGENIC
SBS	Chr11	26782473	T-A	Hetero	INTERGENIC
SBS	Chr12	6183006	G-A	Hetero	INTERGENIC
SBS	Chr12	13927926	C-T	Hetero	INTERGENIC
SBS	Chr12	16721870	C-T	Hetero	INTERGENIC
SBS	Chr12	21162737	C-T	Hetero	INTERGENIC
SBS	Chr12	24782536	C-T	Homo	INTERGENIC
SBS	Chr12	26189135	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1496811	1496814	3
Deletion	Chr1	3150701	3150703	2
Deletion	Chr7	3459001	3487000	27999	2
Deletion	Chr5	6279966	6279968	2
Deletion	Chr4	11945010	11945011	1
Deletion	Chr10	12026832	12026836	4
Deletion	Chr4	14246742	14246750	8
Deletion	Chr6	21008814	21008815	1
Deletion	Chr10	21287218	21287219	1
Deletion	Chr6	23188750	23188751	1
Deletion	Chr10	23539072	23539074	2
Deletion	Chr4	27954001	27975000	20999	7
Deletion	Chr4	28518029	28518036	7
Deletion	Chr3	29992603	29992604	1
Deletion	Chr3	31854648	31854652	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes