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| Mutant Information |
|---|
| Mutant Name | W427-1-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W427-1-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5565842 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 39575840 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g427400 |
| SBS | Chr1 | 42205561 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 633326 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 1678036 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 24967410 | T-G | Homo | INTRON | |
| SBS | Chr3 | 32760029 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 33070034 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 516864 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3433596 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5607374 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 20659921 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 15340025 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 4494502 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 8273452 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 9845425 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17210613 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20892658 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23305905 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17767029 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2967401 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2585707 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5159336 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 22956717 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6053097 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 20469045 | C-T | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 513028 | 513030 | 2 | |
| Deletion | Chr11 | 2622536 | 2622553 | 17 | |
| Deletion | Chr9 | 6686003 | 6686105 | 102 | |
| Deletion | Chr10 | 9479118 | 9479119 | 1 | |
| Deletion | Chr3 | 12808061 | 12808062 | 1 | |
| Deletion | Chr10 | 13010735 | 13010747 | 12 | |
| Deletion | Chr10 | 16033496 | 16033503 | 7 | |
| Deletion | Chr4 | 16844001 | 16870000 | 25999 | OsKitaake04g082700 |
| Deletion | Chr1 | 16888148 | 16888153 | 5 | |
| Deletion | Chr4 | 17576967 | 17576968 | 1 | |
| Deletion | Chr6 | 23830291 | 23830301 | 10 | |
| Deletion | Chr4 | 30669627 | 30669628 | 1 | |
| Deletion | Chr2 | 32697155 | 32697158 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 32299490 | 32299493 | 2 | |
| Insertion | Chr2 | 14751541 | 14751544 | 2 | |
| Insertion | Chr6 | 6952324 | 6952327 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 25281493 | 25723359 | |
| Inversion | Chr5 | 25361270 | 25723357 | |
| Inversion | Chr4 | 31076778 | 31130317 | 2 |
| Inversion | Chr4 | 31076781 | 31130319 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3483257 | Chr3 | 7008860 | |
| Translocation | Chr8 | 27700896 | Chr4 | 32771578 | |
| Translocation | Chr8 | 27701609 | Chr4 | 32771574 |