Search Kitaake

Mutant Information

Mutant Name	W463-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W463-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 196100 T-A Homo INTERGENIC
SBS Chr1 1379502 T-A Hetero UTR_5_PRIME
SBS Chr1 7725882 T-A Homo INTERGENIC
SBS Chr1 34792744 A-G Homo INTERGENIC
SBS Chr1 38254104 T-A Hetero INTERGENIC
SBS Chr1 42216029 C-T Hetero INTERGENIC
SBS Chr2 20512869 A-C Homo UTR_3_PRIME
SBS Chr2 33823825 C-T Homo INTERGENIC
SBS Chr3 18521900 T-A Homo START_GAINED
SBS Chr3 24652534 C-T Hetero INTERGENIC
SBS Chr3 25092651 C-G Hetero UTR_3_PRIME
SBS Chr3 27563821 C-T Hetero INTERGENIC
SBS Chr3 32842951 C-T Hetero INTERGENIC
SBS Chr3 37548522 G-T Hetero INTERGENIC
SBS Chr4 9661296 G-T Homo INTERGENIC
SBS Chr4 16024177 C-T Homo INTERGENIC
SBS Chr5 6761649 T-C Homo INTRON
SBS Chr5 9992165 A-C Homo INTERGENIC
SBS Chr5 13862850 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g107500
SBS Chr5 17456441 C-T Hetero INTERGENIC
SBS Chr6 12847943 G-C Homo INTERGENIC
SBS Chr6 22379815 G-T Homo INTERGENIC
SBS Chr7 1168626 C-T Homo INTRON
SBS Chr7 26267207 T-G Homo INTRON
SBS Chr8 17602806 C-A Homo INTRON
SBS Chr8 23328649 T-G Homo INTERGENIC
SBS Chr8 27515388 C-A Homo INTERGENIC
SBS Chr8 28763530 C-G Homo INTERGENIC
SBS Chr9 1212753 C-A Hetero INTERGENIC
SBS Chr9 5288516 G-A Hetero INTERGENIC
SBS Chr9 5444782 T-C Hetero INTERGENIC
SBS Chr9 11865512 C-T Hetero INTERGENIC
SBS Chr10 15008014 C-T Homo INTERGENIC
SBS Chr10 15310385 G-T Homo INTERGENIC
SBS Chr10 15310386 A-T Homo INTERGENIC
SBS Chr10 21795010 T-C Hetero INTERGENIC
SBS Chr11 8860943 G-T Hetero INTERGENIC
SBS Chr11 9915582 T-C Homo INTERGENIC
SBS Chr12 7366507 T-G Hetero INTERGENIC
SBS Chr12 11949562 T-A Hetero INTERGENIC
SBS Chr12 12889333 C-T Hetero INTERGENIC
SBS Chr12 18461215 A-C Hetero INTERGENIC
SBS Chr12 23027301 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3084119 3084413 294
Deletion Chr8 3370816 3370817 1
Deletion Chr5 5596344 5596347 3
Deletion Chr5 6745783 6745794 11
Deletion Chr8 7668956 7668957 1
Deletion Chr4 8004172 8004175 3
Deletion Chr4 10248875 10248876 1
Deletion Chr6 13314041 13314052 11
Deletion Chr6 14231815 14231817 2
Deletion Chr6 14232001 14534000 301999 8
Deletion Chr6 15717121 15717131 10
Deletion Chr1 19960266 19960278 12
Deletion Chr2 22074356 22074360 4
Deletion Chr5 23401494 23401501 7
Deletion Chr11 26143679 26143689 10 OsKitaake11g211200
Deletion Chr6 26818878 26818880 2
Deletion Chr2 32217762 32217768 6
Deletion Chr1 34967443 34967447 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18234954 18234962 7
Insertion Chr6 11347 11349 1
Insertion Chr7 11994714 11994716 1
Insertion Chr8 21770418 21770421 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 10183263 10983451 2
Inversion Chr1 10447203 10983436 OsKitaake01g134900
Inversion Chr2 33754411 34540767 OsKitaake02g349100
Inversion Chr2 33754424 34540789 OsKitaake02g349100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	196100	T-A	Homo	INTERGENIC
SBS	Chr1	1379502	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	7725882	T-A	Homo	INTERGENIC
SBS	Chr1	34792744	A-G	Homo	INTERGENIC
SBS	Chr1	38254104	T-A	Hetero	INTERGENIC
SBS	Chr1	42216029	C-T	Hetero	INTERGENIC
SBS	Chr2	20512869	A-C	Homo	UTR_3_PRIME
SBS	Chr2	33823825	C-T	Homo	INTERGENIC
SBS	Chr3	18521900	T-A	Homo	START_GAINED
SBS	Chr3	24652534	C-T	Hetero	INTERGENIC
SBS	Chr3	25092651	C-G	Hetero	UTR_3_PRIME
SBS	Chr3	27563821	C-T	Hetero	INTERGENIC
SBS	Chr3	32842951	C-T	Hetero	INTERGENIC
SBS	Chr3	37548522	G-T	Hetero	INTERGENIC
SBS	Chr4	9661296	G-T	Homo	INTERGENIC
SBS	Chr4	16024177	C-T	Homo	INTERGENIC
SBS	Chr5	6761649	T-C	Homo	INTRON
SBS	Chr5	9992165	A-C	Homo	INTERGENIC
SBS	Chr5	13862850	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g107500
SBS	Chr5	17456441	C-T	Hetero	INTERGENIC
SBS	Chr6	12847943	G-C	Homo	INTERGENIC
SBS	Chr6	22379815	G-T	Homo	INTERGENIC
SBS	Chr7	1168626	C-T	Homo	INTRON
SBS	Chr7	26267207	T-G	Homo	INTRON
SBS	Chr8	17602806	C-A	Homo	INTRON
SBS	Chr8	23328649	T-G	Homo	INTERGENIC
SBS	Chr8	27515388	C-A	Homo	INTERGENIC
SBS	Chr8	28763530	C-G	Homo	INTERGENIC
SBS	Chr9	1212753	C-A	Hetero	INTERGENIC
SBS	Chr9	5288516	G-A	Hetero	INTERGENIC
SBS	Chr9	5444782	T-C	Hetero	INTERGENIC
SBS	Chr9	11865512	C-T	Hetero	INTERGENIC
SBS	Chr10	15008014	C-T	Homo	INTERGENIC
SBS	Chr10	15310385	G-T	Homo	INTERGENIC
SBS	Chr10	15310386	A-T	Homo	INTERGENIC
SBS	Chr10	21795010	T-C	Hetero	INTERGENIC
SBS	Chr11	8860943	G-T	Hetero	INTERGENIC
SBS	Chr11	9915582	T-C	Homo	INTERGENIC
SBS	Chr12	7366507	T-G	Hetero	INTERGENIC
SBS	Chr12	11949562	T-A	Hetero	INTERGENIC
SBS	Chr12	12889333	C-T	Hetero	INTERGENIC
SBS	Chr12	18461215	A-C	Hetero	INTERGENIC
SBS	Chr12	23027301	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3084119	3084413	294
Deletion	Chr8	3370816	3370817	1
Deletion	Chr5	5596344	5596347	3
Deletion	Chr5	6745783	6745794	11
Deletion	Chr8	7668956	7668957	1
Deletion	Chr4	8004172	8004175	3
Deletion	Chr4	10248875	10248876	1
Deletion	Chr6	13314041	13314052	11
Deletion	Chr6	14231815	14231817	2
Deletion	Chr6	14232001	14534000	301999	8
Deletion	Chr6	15717121	15717131	10
Deletion	Chr1	19960266	19960278	12
Deletion	Chr2	22074356	22074360	4
Deletion	Chr5	23401494	23401501	7
Deletion	Chr11	26143679	26143689	10	OsKitaake11g211200
Deletion	Chr6	26818878	26818880	2
Deletion	Chr2	32217762	32217768	6
Deletion	Chr1	34967443	34967447	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10183263	10983451	2
Inversion	Chr1	10447203	10983436	OsKitaake01g134900
Inversion	Chr2	33754411	34540767	OsKitaake02g349100
Inversion	Chr2	33754424	34540789	OsKitaake02g349100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes