Search Kitaake

Mutant Information

Mutant Name	W470-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W470-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20479501 T-A Hetero INTERGENIC
SBS Chr1 42618414 G-A Homo INTRON
SBS Chr1 43730171 G-A Homo SYNONYMOUS_CODING
SBS Chr2 4921673 T-G Homo INTERGENIC
SBS Chr2 19913833 C-T Hetero INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 25057342 G-T Hetero INTERGENIC
SBS Chr3 33475354 T-C Hetero UTR_5_PRIME
SBS Chr3 34422099 C-T Hetero UTR_3_PRIME
SBS Chr4 2760081 C-T Hetero INTERGENIC
SBS Chr4 5206656 T-C Hetero INTERGENIC
SBS Chr4 9142097 G-C Hetero INTERGENIC
SBS Chr4 17110728 T-A Hetero INTERGENIC
SBS Chr4 26249257 A-T Hetero UTR_3_PRIME
SBS Chr4 36779041 T-C Hetero INTRON
SBS Chr5 1325568 T-A Hetero INTERGENIC
SBS Chr5 1462076 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g018200
SBS Chr5 2871662 A-C Hetero INTRON
SBS Chr5 3656981 T-G Hetero INTERGENIC
SBS Chr5 6955363 T-A Hetero INTERGENIC
SBS Chr5 10258765 C-T Homo INTERGENIC
SBS Chr5 10543992 C-G Hetero INTERGENIC
SBS Chr5 27191355 C-T Hetero INTERGENIC
SBS Chr6 1851513 G-A Homo INTERGENIC
SBS Chr6 11785953 C-T Hetero INTERGENIC
SBS Chr6 18895892 C-T Hetero INTERGENIC
SBS Chr6 19220245 G-A Hetero INTERGENIC
SBS Chr6 27390030 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 6392171 T-G Homo INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 12176557 G-A Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 21347925 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g177300
SBS Chr7 21761259 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g182900
SBS Chr8 2734489 G-A Hetero INTERGENIC
SBS Chr8 2734503 C-T Hetero INTERGENIC
SBS Chr8 4815278 T-C Homo INTERGENIC
SBS Chr8 7838005 G-A Homo INTERGENIC
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 20478941 C-T Hetero INTERGENIC
SBS Chr9 3161215 T-A Homo INTERGENIC
SBS Chr9 3785174 C-A Homo INTERGENIC
SBS Chr9 4758281 G-A Hetero INTERGENIC
SBS Chr9 6694365 C-A Homo INTERGENIC
SBS Chr9 8006979 A-T Hetero INTERGENIC
SBS Chr9 8006998 G-T Hetero INTERGENIC
SBS Chr10 8675473 C-A Hetero INTERGENIC
SBS Chr10 13260678 G-A Hetero INTERGENIC
SBS Chr11 8423426 C-T Hetero INTERGENIC
SBS Chr12 13266759 C-T Homo INTERGENIC
SBS Chr12 21290479 C-T Hetero INTERGENIC
SBS Chr12 22953386 A-G Hetero SYNONYMOUS_CODING

Deletions: 45

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5941 5942 1
Deletion Chr6 6170 6171 1
Deletion Chr6 19031 19032 1
Deletion Chr6 20090 20091 1
Deletion Chr9 862200 862206 6
Deletion Chr9 2744768 2744769 1
Deletion Chr9 2745018 2745019 1
Deletion Chr7 5029758 5029759 1
Deletion Chr1 5544705 5544708 3
Deletion Chr10 8669477 8669643 166
Deletion Chr10 8671296 8671462 166
Deletion Chr10 8672714 8672715 1
Deletion Chr4 10420847 10420848 1
Deletion Chr10 11612356 11612359 3 OsKitaake10g069200
Deletion Chr11 12521033 12521199 166
Deletion Chr11 12521222 12521707 485
Deletion Chr11 12523600 12523766 166
Deletion Chr10 13260752 13260753 1
Deletion Chr3 13281977 13281982 5
Deletion Chr4 13561661 13561663 2
Deletion Chr2 13846242 13846396 154
Deletion Chr2 14394644 14394645 1
Deletion Chr6 15743124 15743125 1
Deletion Chr6 15750509 15750510 1
Deletion Chr6 15750974 15750975 1
Deletion Chr6 15751284 15751285 1
Deletion Chr1 17186822 17186987 165
Deletion Chr1 17195165 17195330 165
Deletion Chr1 17284932 17284933 1
Deletion Chr11 17558459 17558464 5
Deletion Chr4 17722892 17722893 1
Deletion Chr11 18576568 18576582 14
Deletion Chr12 18960132 18960144 12
Deletion Chr3 20001977 20002132 155
Deletion Chr3 20044581 20044736 155
Deletion Chr3 20046701 20046856 155
Deletion Chr3 20047806 20047961 155
Deletion Chr3 20050721 20050876 155
Deletion Chr3 20052841 20052996 155
Deletion Chr11 20127830 20127832 2
Deletion Chr6 20948579 20948581 2
Deletion Chr7 23057198 23057200 2
Deletion Chr11 27541328 27541398 70
Deletion Chr5 28834648 28834649 1
Deletion Chr1 34428676 34428678 2

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42748037 42748040 2
Insertion Chr4 17516385 17516389 3
Insertion Chr6 838306 838313 6
Insertion Chr10 813823 813836 12
Insertion Chr1 17221953 17221955 1
Insertion Chr3 16743903 16743905 1
Insertion Chr3 20027335 20027337 1
Insertion Chr3 20050183 20050185 1
Insertion Chr10 8681609 8681611 1
Insertion Chr10 13525053 13525056 2 OsKitaake10g081500
Insertion Chr11 12530004 12530006 1
Insertion Chr12 11713778 11713780 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 30918436 30925782

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 252084 Chr10 13146790
Translocation Chr4 585065 Chr1 7619550 OsKitaake04g004300
Translocation Chr4 585075 Chr1 7612781 OsKitaake04g004300
Translocation Chr10 8667845 Chr1 17285796
Translocation Chr7 10842401 Chr1 19342538
Translocation Chr10 13161043 Chr8 13883618

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20479501	T-A	Hetero	INTERGENIC
SBS	Chr1	42618414	G-A	Homo	INTRON
SBS	Chr1	43730171	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	4921673	T-G	Homo	INTERGENIC
SBS	Chr2	19913833	C-T	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	25057342	G-T	Hetero	INTERGENIC
SBS	Chr3	33475354	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	34422099	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	2760081	C-T	Hetero	INTERGENIC
SBS	Chr4	5206656	T-C	Hetero	INTERGENIC
SBS	Chr4	9142097	G-C	Hetero	INTERGENIC
SBS	Chr4	17110728	T-A	Hetero	INTERGENIC
SBS	Chr4	26249257	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	36779041	T-C	Hetero	INTRON
SBS	Chr5	1325568	T-A	Hetero	INTERGENIC
SBS	Chr5	1462076	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g018200
SBS	Chr5	2871662	A-C	Hetero	INTRON
SBS	Chr5	3656981	T-G	Hetero	INTERGENIC
SBS	Chr5	6955363	T-A	Hetero	INTERGENIC
SBS	Chr5	10258765	C-T	Homo	INTERGENIC
SBS	Chr5	10543992	C-G	Hetero	INTERGENIC
SBS	Chr5	27191355	C-T	Hetero	INTERGENIC
SBS	Chr6	1851513	G-A	Homo	INTERGENIC
SBS	Chr6	11785953	C-T	Hetero	INTERGENIC
SBS	Chr6	18895892	C-T	Hetero	INTERGENIC
SBS	Chr6	19220245	G-A	Hetero	INTERGENIC
SBS	Chr6	27390030	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	6392171	T-G	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	12176557	G-A	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	21347925	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g177300
SBS	Chr7	21761259	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g182900
SBS	Chr8	2734489	G-A	Hetero	INTERGENIC
SBS	Chr8	2734503	C-T	Hetero	INTERGENIC
SBS	Chr8	4815278	T-C	Homo	INTERGENIC
SBS	Chr8	7838005	G-A	Homo	INTERGENIC
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	20478941	C-T	Hetero	INTERGENIC
SBS	Chr9	3161215	T-A	Homo	INTERGENIC
SBS	Chr9	3785174	C-A	Homo	INTERGENIC
SBS	Chr9	4758281	G-A	Hetero	INTERGENIC
SBS	Chr9	6694365	C-A	Homo	INTERGENIC
SBS	Chr9	8006979	A-T	Hetero	INTERGENIC
SBS	Chr9	8006998	G-T	Hetero	INTERGENIC
SBS	Chr10	8675473	C-A	Hetero	INTERGENIC
SBS	Chr10	13260678	G-A	Hetero	INTERGENIC
SBS	Chr11	8423426	C-T	Hetero	INTERGENIC
SBS	Chr12	13266759	C-T	Homo	INTERGENIC
SBS	Chr12	21290479	C-T	Hetero	INTERGENIC
SBS	Chr12	22953386	A-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5941	5942	1
Deletion	Chr6	6170	6171	1
Deletion	Chr6	19031	19032	1
Deletion	Chr6	20090	20091	1
Deletion	Chr9	862200	862206	6
Deletion	Chr9	2744768	2744769	1
Deletion	Chr9	2745018	2745019	1
Deletion	Chr7	5029758	5029759	1
Deletion	Chr1	5544705	5544708	3
Deletion	Chr10	8669477	8669643	166
Deletion	Chr10	8671296	8671462	166
Deletion	Chr10	8672714	8672715	1
Deletion	Chr4	10420847	10420848	1
Deletion	Chr10	11612356	11612359	3	OsKitaake10g069200
Deletion	Chr11	12521033	12521199	166
Deletion	Chr11	12521222	12521707	485
Deletion	Chr11	12523600	12523766	166
Deletion	Chr10	13260752	13260753	1
Deletion	Chr3	13281977	13281982	5
Deletion	Chr4	13561661	13561663	2
Deletion	Chr2	13846242	13846396	154
Deletion	Chr2	14394644	14394645	1
Deletion	Chr6	15743124	15743125	1
Deletion	Chr6	15750509	15750510	1
Deletion	Chr6	15750974	15750975	1
Deletion	Chr6	15751284	15751285	1
Deletion	Chr1	17186822	17186987	165
Deletion	Chr1	17195165	17195330	165
Deletion	Chr1	17284932	17284933	1
Deletion	Chr11	17558459	17558464	5
Deletion	Chr4	17722892	17722893	1
Deletion	Chr11	18576568	18576582	14
Deletion	Chr12	18960132	18960144	12
Deletion	Chr3	20001977	20002132	155
Deletion	Chr3	20044581	20044736	155
Deletion	Chr3	20046701	20046856	155
Deletion	Chr3	20047806	20047961	155
Deletion	Chr3	20050721	20050876	155
Deletion	Chr3	20052841	20052996	155
Deletion	Chr11	20127830	20127832	2
Deletion	Chr6	20948579	20948581	2
Deletion	Chr7	23057198	23057200	2
Deletion	Chr11	27541328	27541398	70
Deletion	Chr5	28834648	28834649	1
Deletion	Chr1	34428676	34428678	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	30918436	30925782

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes