Search Kitaake
| Mutant Information |
|---|
| Mutant Name | W502-3-4 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W502-3-4 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10247772 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 12196890 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32082601 | C-A | Homo | INTRON | |
| SBS | Chr2 | 32082602 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 22234516 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26165000 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 350789 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g002000 |
| SBS | Chr4 | 3193319 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 12552104 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6936147 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8973341 | T-A | Homo | INTRON | |
| SBS | Chr5 | 19899746 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19853742 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29391991 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4011591 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7911432 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11896999 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 15655320 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 19391340 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7089286 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7906456 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20224253 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 26085024 | A-T | Homo | INTRON | |
| SBS | Chr9 | 6334034 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12578963 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 22353542 | T-G | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 3492014 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 5306087 | C-G | Homo | INTRON | |
| SBS | Chr12 | 15161861 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16125197 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26048665 | T-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 2872519 | 2872528 | 9 | |
| Deletion | Chr3 | 3731098 | 3731099 | 1 | |
| Deletion | Chr4 | 8419300 | 8419303 | 3 | |
| Deletion | Chr4 | 10396607 | 10396608 | 1 | OsKitaake04g055500 |
| Deletion | Chr8 | 10891278 | 10891282 | 4 | |
| Deletion | Chr11 | 11510001 | 11540000 | 29999 | 2 |
| Deletion | Chr10 | 15339147 | 15339152 | 5 | |
| Deletion | Chr3 | 15902742 | 15902757 | 15 | |
| Deletion | Chr8 | 18782492 | 18782493 | 1 | |
| Deletion | Chr4 | 18928632 | 18928636 | 4 | |
| Deletion | Chr8 | 21890615 | 21890623 | 8 | |
| Deletion | Chr3 | 26849011 | 26849012 | 1 | OsKitaake03g179600 |
| Deletion | Chr3 | 27278526 | 27278528 | 2 | |
| Deletion | Chr8 | 28357374 | 28357394 | 20 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27630046 | 27630049 | 2 | |
| Insertion | Chr7 | 3495305 | 3495308 | 2 | |
| Insertion | Chr6 | 53663 | 53665 | 1 | |
| Insertion | Chr12 | 16125353 | 16125355 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 26678711 | 26814405 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 14359552 | Chr6 | 1536841 | OsKitaake06g017900 |
| Translocation | Chr10 | 14359563 | Chr6 | 1513468 | |
| Translocation | Chr2 | 35785070 | Chr1 | 38540586 | |
| Translocation | Chr2 | 36097473 | Chr1 | 38540588 |