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| Mutant Information |
|---|
| Mutant Name | W577-3-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W577-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22274420 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13336316 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 17887269 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4016412 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 4016413 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 4016414 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 4294071 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 9286648 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7239591 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15566453 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 17868371 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18481731 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g169003 |
| SBS | Chr7 | 3699143 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11210404 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 12248010 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 20386525 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15455597 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 4485801 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 8986112 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11281624 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 11484055 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 17985680 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11922756 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 11960003 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20049844 | A-T | Homo | INTRON | |
| SBS | Chr11 | 21582840 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 24320534 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4755784 | G-T | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 333710 | 333712 | 2 | OsKitaake07g002800 |
| Deletion | Chr7 | 2548656 | 2548661 | 5 | |
| Deletion | Chr5 | 3714656 | 3714658 | 2 | |
| Deletion | Chr7 | 4272405 | 4272408 | 3 | |
| Deletion | Chr2 | 5893047 | 5893048 | 1 | |
| Deletion | Chr2 | 5918362 | 5918363 | 1 | |
| Deletion | Chr5 | 7077001 | 7358000 | 280999 | 26 |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr6 | 14574682 | 14574690 | 8 | |
| Deletion | Chr5 | 16307085 | 16307282 | 197 | |
| Deletion | Chr2 | 16451904 | 16451906 | 2 | |
| Deletion | Chr1 | 19507496 | 19507505 | 9 | |
| Deletion | Chr2 | 21014964 | 21014966 | 2 | |
| Deletion | Chr11 | 23316260 | 23316261 | 1 | |
| Deletion | Chr2 | 24743001 | 24854000 | 110999 | 19 |
| Deletion | Chr1 | 26261784 | 26261786 | 2 | |
| Deletion | Chr11 | 27381104 | 27381106 | 2 | |
| Deletion | Chr6 | 30633699 | 30633707 | 8 | |
| Deletion | Chr4 | 36049054 | 36049062 | 8 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 6751529 | 7358323 | OsKitaake05g068200 |
| Inversion | Chr6 | 6808514 | 7148207 | OsKitaake06g092100 |
| Inversion | Chr6 | 6808526 | 7148206 | OsKitaake06g092100 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 1328358 | Chr4 | 16148503 |