Search Kitaake

Mutant Information

Mutant Name	W591-4-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W591-4-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21313248 T-A Hetero INTERGENIC
SBS Chr1 27050210 T-C Hetero INTERGENIC
SBS Chr1 42977104 C-A Homo INTERGENIC
SBS Chr2 5420189 C-G Homo INTERGENIC
SBS Chr2 18893928 C-T Homo INTERGENIC
SBS Chr2 26146474 A-T Hetero INTRON
SBS Chr2 27363114 G-T Hetero INTRON
SBS Chr2 29932118 C-A Hetero INTERGENIC
SBS Chr2 32706492 C-A Hetero INTERGENIC
SBS Chr2 33994056 C-T Hetero INTERGENIC
SBS Chr2 35045229 A-G Homo INTERGENIC
SBS Chr2 35165830 C-T Hetero INTRON
SBS Chr3 590484 A-T Hetero INTRON
SBS Chr3 7800571 A-G Hetero INTERGENIC
SBS Chr3 33893397 C-A Hetero INTERGENIC
SBS Chr4 968041 G-A Hetero INTERGENIC
SBS Chr4 2384588 G-A Hetero INTERGENIC
SBS Chr4 2602329 A-T Hetero INTERGENIC
SBS Chr4 3023914 C-A Hetero INTERGENIC
SBS Chr4 5955555 C-T Hetero INTERGENIC
SBS Chr5 8543160 G-A Homo INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr6 19499973 T-C Homo INTERGENIC
SBS Chr7 13657793 C-T Hetero INTERGENIC
SBS Chr7 25819055 C-T Hetero INTERGENIC
SBS Chr8 2310067 C-T Homo UTR_3_PRIME
SBS Chr8 8703557 A-G Homo INTERGENIC
SBS Chr8 10463683 C-T Homo INTERGENIC
SBS Chr8 16715788 C-T Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr10 5413861 G-T Homo INTERGENIC
SBS Chr11 24337151 C-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1405602 1405612 10
Deletion Chr5 2790341 2790344 3
Deletion Chr4 4466715 4466716 1
Deletion Chr8 5255130 5255132 2
Deletion Chr10 5776635 5776644 9
Deletion Chr6 7761129 7761130 1
Deletion Chr9 9851376 9851386 10
Deletion Chr7 9911001 9954000 42999 3
Deletion Chr7 9957001 10118000 160999 12
Deletion Chr8 10787850 10787942 92
Deletion Chr10 13880210 13880216 6
Deletion Chr3 17035437 17035444 7
Deletion Chr2 19630001 19712000 81999 7
Deletion Chr11 22292351 22292361 10
Deletion Chr4 36463062 36463065 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30981330 30981333 2
Insertion Chr3 3195166 3195170 3
Insertion Chr3 22990660 22990663 2
Insertion Chr10 14863261 14863264 2
Insertion Chr3 26723736 26723738 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 21218164 22101812 OsKitaake12g173700
Inversion Chr12 21218166 22101821 OsKitaake12g173700
Inversion Chr6 27486791 27506935 OsKitaake06g248300
Inversion Chr6 27486801 27506945 OsKitaake06g248300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21500478 Chr4 18617090

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21313248	T-A	Hetero	INTERGENIC
SBS	Chr1	27050210	T-C	Hetero	INTERGENIC
SBS	Chr1	42977104	C-A	Homo	INTERGENIC
SBS	Chr2	5420189	C-G	Homo	INTERGENIC
SBS	Chr2	18893928	C-T	Homo	INTERGENIC
SBS	Chr2	26146474	A-T	Hetero	INTRON
SBS	Chr2	27363114	G-T	Hetero	INTRON
SBS	Chr2	29932118	C-A	Hetero	INTERGENIC
SBS	Chr2	32706492	C-A	Hetero	INTERGENIC
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr2	35045229	A-G	Homo	INTERGENIC
SBS	Chr2	35165830	C-T	Hetero	INTRON
SBS	Chr3	590484	A-T	Hetero	INTRON
SBS	Chr3	7800571	A-G	Hetero	INTERGENIC
SBS	Chr3	33893397	C-A	Hetero	INTERGENIC
SBS	Chr4	968041	G-A	Hetero	INTERGENIC
SBS	Chr4	2384588	G-A	Hetero	INTERGENIC
SBS	Chr4	2602329	A-T	Hetero	INTERGENIC
SBS	Chr4	3023914	C-A	Hetero	INTERGENIC
SBS	Chr4	5955555	C-T	Hetero	INTERGENIC
SBS	Chr5	8543160	G-A	Homo	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr6	19499973	T-C	Homo	INTERGENIC
SBS	Chr7	13657793	C-T	Hetero	INTERGENIC
SBS	Chr7	25819055	C-T	Hetero	INTERGENIC
SBS	Chr8	2310067	C-T	Homo	UTR_3_PRIME
SBS	Chr8	8703557	A-G	Homo	INTERGENIC
SBS	Chr8	10463683	C-T	Homo	INTERGENIC
SBS	Chr8	16715788	C-T	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr10	5413861	G-T	Homo	INTERGENIC
SBS	Chr11	24337151	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1405602	1405612	10
Deletion	Chr5	2790341	2790344	3
Deletion	Chr4	4466715	4466716	1
Deletion	Chr8	5255130	5255132	2
Deletion	Chr10	5776635	5776644	9
Deletion	Chr6	7761129	7761130	1
Deletion	Chr9	9851376	9851386	10
Deletion	Chr7	9911001	9954000	42999	3
Deletion	Chr7	9957001	10118000	160999	12
Deletion	Chr8	10787850	10787942	92
Deletion	Chr10	13880210	13880216	6
Deletion	Chr3	17035437	17035444	7
Deletion	Chr2	19630001	19712000	81999	7
Deletion	Chr11	22292351	22292361	10
Deletion	Chr4	36463062	36463065	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	21218164	22101812	OsKitaake12g173700
Inversion	Chr12	21218166	22101821	OsKitaake12g173700
Inversion	Chr6	27486791	27506935	OsKitaake06g248300
Inversion	Chr6	27486801	27506945	OsKitaake06g248300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes