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Mutant Information

Mutant Name	W598-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W598-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5167741 C-A Hetero INTERGENIC
SBS Chr1 12901949 G-A Homo INTERGENIC
SBS Chr1 26744734 T-A Hetero INTERGENIC
SBS Chr2 24780892 C-T Hetero INTERGENIC
SBS Chr2 29162673 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 8483617 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g116200
SBS Chr3 22027682 G-A Homo INTERGENIC
SBS Chr3 31049073 C-A Homo INTERGENIC
SBS Chr3 36052794 A-G Homo UTR_5_PRIME
SBS Chr3 37241377 C-T Homo INTRON
SBS Chr4 9102038 A-T Homo INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr5 5456487 C-A Hetero INTERGENIC
SBS Chr5 11046514 G-A Hetero INTERGENIC
SBS Chr6 7709233 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g098300
SBS Chr6 12769620 G-T Homo INTERGENIC
SBS Chr6 17176943 A-T Homo INTERGENIC
SBS Chr6 30055077 C-T Hetero INTERGENIC
SBS Chr7 1595661 G-A Homo INTERGENIC
SBS Chr7 11169513 G-A Hetero INTERGENIC
SBS Chr7 16645612 G-T Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 10797354 A-T Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 25599659 C-T Hetero INTERGENIC
SBS Chr8 27057032 T-A Hetero INTRON
SBS Chr8 27057033 C-A Hetero INTRON
SBS Chr10 3086269 C-A Homo INTERGENIC
SBS Chr10 3086278 T-C Homo INTERGENIC
SBS Chr10 17015899 G-C Homo INTERGENIC
SBS Chr11 14578711 C-T Hetero INTERGENIC
SBS Chr11 22865482 G-C Homo INTERGENIC
SBS Chr12 1928537 C-G Hetero INTERGENIC
SBS Chr12 2867292 G-A Hetero INTERGENIC
SBS Chr12 9691667 A-C Homo INTERGENIC
SBS Chr12 13310928 T-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1702701 1702717 16
Deletion Chr3 1900498 1900501 3
Deletion Chr11 3971987 3971989 2
Deletion Chr3 3996308 3996312 4
Deletion Chr9 7016722 7016723 1
Deletion Chr8 10794640 10794641 1
Deletion Chr12 11937622 11937631 9
Deletion Chr8 12807026 12807027 1
Deletion Chr1 12918001 12939000 20999 3
Deletion Chr7 14043867 14043876 9
Deletion Chr6 17774244 17774248 4
Deletion Chr7 18755934 18755936 2 OsKitaake07g152700
Deletion Chr8 20888468 20888470 2
Deletion Chr4 22149736 22149745 9
Deletion Chr6 24429701 24429712 11
Deletion Chr5 24782293 24782300 7
Deletion Chr6 27961996 27961997 1
Deletion Chr11 28404388 28404389 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 7010477 7010480 2
Insertion Chr3 26310606 26310609 2
Insertion Chr6 6079 6081 1
Insertion Chr8 12905213 12905215 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 16609314 16897114 OsKitaake07g136550
Inversion Chr7 16609316 16894266 OsKitaake07g136550
Inversion Chr11 26324075 27230725 OsKitaake11g222500
Inversion Chr11 26324087 27231692

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5167741	C-A	Hetero	INTERGENIC
SBS	Chr1	12901949	G-A	Homo	INTERGENIC
SBS	Chr1	26744734	T-A	Hetero	INTERGENIC
SBS	Chr2	24780892	C-T	Hetero	INTERGENIC
SBS	Chr2	29162673	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	8483617	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g116200
SBS	Chr3	22027682	G-A	Homo	INTERGENIC
SBS	Chr3	31049073	C-A	Homo	INTERGENIC
SBS	Chr3	36052794	A-G	Homo	UTR_5_PRIME
SBS	Chr3	37241377	C-T	Homo	INTRON
SBS	Chr4	9102038	A-T	Homo	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr5	5456487	C-A	Hetero	INTERGENIC
SBS	Chr5	11046514	G-A	Hetero	INTERGENIC
SBS	Chr6	7709233	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g098300
SBS	Chr6	12769620	G-T	Homo	INTERGENIC
SBS	Chr6	17176943	A-T	Homo	INTERGENIC
SBS	Chr6	30055077	C-T	Hetero	INTERGENIC
SBS	Chr7	1595661	G-A	Homo	INTERGENIC
SBS	Chr7	11169513	G-A	Hetero	INTERGENIC
SBS	Chr7	16645612	G-T	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	10797354	A-T	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	25599659	C-T	Hetero	INTERGENIC
SBS	Chr8	27057032	T-A	Hetero	INTRON
SBS	Chr8	27057033	C-A	Hetero	INTRON
SBS	Chr10	3086269	C-A	Homo	INTERGENIC
SBS	Chr10	3086278	T-C	Homo	INTERGENIC
SBS	Chr10	17015899	G-C	Homo	INTERGENIC
SBS	Chr11	14578711	C-T	Hetero	INTERGENIC
SBS	Chr11	22865482	G-C	Homo	INTERGENIC
SBS	Chr12	1928537	C-G	Hetero	INTERGENIC
SBS	Chr12	2867292	G-A	Hetero	INTERGENIC
SBS	Chr12	9691667	A-C	Homo	INTERGENIC
SBS	Chr12	13310928	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1702701	1702717	16
Deletion	Chr3	1900498	1900501	3
Deletion	Chr11	3971987	3971989	2
Deletion	Chr3	3996308	3996312	4
Deletion	Chr9	7016722	7016723	1
Deletion	Chr8	10794640	10794641	1
Deletion	Chr12	11937622	11937631	9
Deletion	Chr8	12807026	12807027	1
Deletion	Chr1	12918001	12939000	20999	3
Deletion	Chr7	14043867	14043876	9
Deletion	Chr6	17774244	17774248	4
Deletion	Chr7	18755934	18755936	2	OsKitaake07g152700
Deletion	Chr8	20888468	20888470	2
Deletion	Chr4	22149736	22149745	9
Deletion	Chr6	24429701	24429712	11
Deletion	Chr5	24782293	24782300	7
Deletion	Chr6	27961996	27961997	1
Deletion	Chr11	28404388	28404389	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	16609314	16897114	OsKitaake07g136550
Inversion	Chr7	16609316	16894266	OsKitaake07g136550
Inversion	Chr11	26324075	27230725	OsKitaake11g222500
Inversion	Chr11	26324087	27231692

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes