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Mutant Information

Mutant Name	W607-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W607-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15479710 C-G Homo SYNONYMOUS_CODING
SBS Chr2 765004 C-T Hetero INTERGENIC
SBS Chr2 12903479 G-C Hetero INTERGENIC
SBS Chr2 14915799 G-A Hetero INTERGENIC
SBS Chr2 15565732 G-A Hetero INTERGENIC
SBS Chr2 23197784 C-T Hetero INTERGENIC
SBS Chr2 35781322 G-A Homo UTR_5_PRIME
SBS Chr3 1662203 C-T Hetero INTRON
SBS Chr3 1903150 A-G Hetero UTR_3_PRIME
SBS Chr3 8940136 G-A Hetero INTRON
SBS Chr3 22216057 C-T Homo INTERGENIC
SBS Chr4 3752039 C-T Hetero INTERGENIC
SBS Chr4 14450245 G-C Homo INTERGENIC
SBS Chr4 27692484 T-G Hetero INTERGENIC
SBS Chr4 28720084 G-A Hetero INTERGENIC
SBS Chr5 28779102 G-A Hetero INTRON
SBS Chr6 9741055 T-C Homo INTERGENIC
SBS Chr6 19203474 G-A Hetero INTERGENIC
SBS Chr6 25198497 G-A Homo INTERGENIC
SBS Chr7 7097331 C-T Hetero INTERGENIC
SBS Chr7 8928616 C-G Hetero INTERGENIC
SBS Chr7 8928675 A-T Hetero INTERGENIC
SBS Chr8 5489313 T-G Hetero INTERGENIC
SBS Chr8 12813596 G-T Homo INTERGENIC
SBS Chr8 14024160 A-T Hetero INTERGENIC
SBS Chr8 17413172 G-A Homo INTERGENIC
SBS Chr11 22927779 C-T Hetero UTR_3_PRIME
SBS Chr12 19654444 G-T Hetero INTERGENIC
SBS Chr12 22047151 C-T Hetero INTERGENIC
SBS Chr12 22452163 C-G Hetero INTERGENIC
SBS Chr12 24089197 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 475723 475727 4
Deletion Chr7 3977504 3977511 7
Deletion Chr10 4551567 4551579 12
Deletion Chr11 6752924 6752927 3
Deletion Chr11 6905896 6905897 1 OsKitaake11g079910
Deletion Chr4 7320643 7320653 10
Deletion Chr9 14308250 14308251 1 OsKitaake09g096300
Deletion Chr9 19203783 19203785 2
Deletion Chr2 20691705 20691789 84
Deletion Chr4 21508526 21508534 8
Deletion Chr7 23350806 23350807 1
Deletion Chr1 25693107 25693117 10 OsKitaake01g249700
Deletion Chr3 28160722 28160724 2
Deletion Chr3 32754514 32754522 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 10038256 10038269 12
Insertion Chr11 17903266 17903269 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2342382 2375245 OsKitaake09g012200
Inversion Chr9 2342383 2375241 OsKitaake09g012200
Inversion Chr9 8569464 8983010 OsKitaake09g052400
Inversion Chr9 8569470 8983036 OsKitaake09g052400
Inversion Chr2 18451053 19118787 OsKitaake02g182900

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1686733 Chr2 19118786 OsKitaake11g022400
Translocation Chr11 1687092 Chr9 13163901 OsKitaake11g022400
Translocation Chr9 13163516 Chr1 41057356 OsKitaake01g448050
Translocation Chr9 13163893 Chr1 41057356 OsKitaake01g448050
Translocation Chr9 13164246 Chr2 18451040 OsKitaake02g182900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15479710	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr2	765004	C-T	Hetero	INTERGENIC
SBS	Chr2	12903479	G-C	Hetero	INTERGENIC
SBS	Chr2	14915799	G-A	Hetero	INTERGENIC
SBS	Chr2	15565732	G-A	Hetero	INTERGENIC
SBS	Chr2	23197784	C-T	Hetero	INTERGENIC
SBS	Chr2	35781322	G-A	Homo	UTR_5_PRIME
SBS	Chr3	1662203	C-T	Hetero	INTRON
SBS	Chr3	1903150	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	8940136	G-A	Hetero	INTRON
SBS	Chr3	22216057	C-T	Homo	INTERGENIC
SBS	Chr4	3752039	C-T	Hetero	INTERGENIC
SBS	Chr4	14450245	G-C	Homo	INTERGENIC
SBS	Chr4	27692484	T-G	Hetero	INTERGENIC
SBS	Chr4	28720084	G-A	Hetero	INTERGENIC
SBS	Chr5	28779102	G-A	Hetero	INTRON
SBS	Chr6	9741055	T-C	Homo	INTERGENIC
SBS	Chr6	19203474	G-A	Hetero	INTERGENIC
SBS	Chr6	25198497	G-A	Homo	INTERGENIC
SBS	Chr7	7097331	C-T	Hetero	INTERGENIC
SBS	Chr7	8928616	C-G	Hetero	INTERGENIC
SBS	Chr7	8928675	A-T	Hetero	INTERGENIC
SBS	Chr8	5489313	T-G	Hetero	INTERGENIC
SBS	Chr8	12813596	G-T	Homo	INTERGENIC
SBS	Chr8	14024160	A-T	Hetero	INTERGENIC
SBS	Chr8	17413172	G-A	Homo	INTERGENIC
SBS	Chr11	22927779	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	19654444	G-T	Hetero	INTERGENIC
SBS	Chr12	22047151	C-T	Hetero	INTERGENIC
SBS	Chr12	22452163	C-G	Hetero	INTERGENIC
SBS	Chr12	24089197	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	475723	475727	4
Deletion	Chr7	3977504	3977511	7
Deletion	Chr10	4551567	4551579	12
Deletion	Chr11	6752924	6752927	3
Deletion	Chr11	6905896	6905897	1	OsKitaake11g079910
Deletion	Chr4	7320643	7320653	10
Deletion	Chr9	14308250	14308251	1	OsKitaake09g096300
Deletion	Chr9	19203783	19203785	2
Deletion	Chr2	20691705	20691789	84
Deletion	Chr4	21508526	21508534	8
Deletion	Chr7	23350806	23350807	1
Deletion	Chr1	25693107	25693117	10	OsKitaake01g249700
Deletion	Chr3	28160722	28160724	2
Deletion	Chr3	32754514	32754522	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2342382	2375245	OsKitaake09g012200
Inversion	Chr9	2342383	2375241	OsKitaake09g012200
Inversion	Chr9	8569464	8983010	OsKitaake09g052400
Inversion	Chr9	8569470	8983036	OsKitaake09g052400
Inversion	Chr2	18451053	19118787	OsKitaake02g182900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes