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Mutant Information

Mutant Name	W7-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W7-1-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9501170 A-T Hetero INTERGENIC
SBS Chr2 782631 T-G Hetero INTERGENIC
SBS Chr2 4033708 T-A Hetero INTERGENIC
SBS Chr2 5486900 A-G Hetero INTERGENIC
SBS Chr2 6287845 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 6689847 G-A Hetero INTERGENIC
SBS Chr2 6689848 G-A Hetero INTERGENIC
SBS Chr2 27027618 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g269800
SBS Chr2 30330491 G-T Homo INTERGENIC
SBS Chr2 33725386 G-A Homo INTRON
SBS Chr3 12103680 G-A Hetero INTERGENIC
SBS Chr3 27248578 G-A Hetero INTERGENIC
SBS Chr4 7257041 C-T Hetero INTRON
SBS Chr4 23774746 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g150400
SBS Chr4 23774747 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g150400
SBS Chr5 5026612 G-T Hetero INTERGENIC
SBS Chr6 20937327 A-G Homo INTRON
SBS Chr6 29415798 C-T Hetero INTERGENIC
SBS Chr7 8085078 G-C Homo INTERGENIC
SBS Chr8 2978313 C-A Homo INTRON
SBS Chr8 2978314 G-A Homo INTRON
SBS Chr8 5489338 A-C Homo INTERGENIC
SBS Chr8 27774765 A-T Hetero INTERGENIC
SBS Chr8 28141116 A-G Hetero INTERGENIC
SBS Chr9 5806680 G-A Hetero INTRON
SBS Chr9 8783119 A-G Homo INTERGENIC
SBS Chr9 15645790 C-T Hetero INTERGENIC
SBS Chr9 19041918 A-T Hetero INTERGENIC
SBS Chr10 2797718 A-T Hetero INTERGENIC
SBS Chr10 8392097 G-T Hetero INTERGENIC
SBS Chr11 13505635 C-T Homo INTERGENIC
SBS Chr11 13505636 T-C Homo INTERGENIC
SBS Chr11 15714672 A-C Hetero INTERGENIC
SBS Chr11 19443507 A-T Homo INTRON
SBS Chr11 19443508 G-T Homo INTRON
SBS Chr12 16036166 A-G Hetero INTERGENIC
SBS Chr12 18142720 C-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 588850 588852 2
Deletion Chr3 624737 624739 2
Deletion Chr1 2149892 2149895 3
Deletion Chr11 4311650 4311653 3
Deletion Chr6 7146808 7146809 1
Deletion Chr8 10806835 10806909 74
Deletion Chr2 11200059 11200061 2
Deletion Chr3 11912029 11912078 49
Deletion Chr9 12948596 12948602 6
Deletion Chr3 14302431 14302432 1
Deletion Chr3 20040046 20040356 310
Deletion Chr12 20997206 20997208 2
Deletion Chr1 24861791 24861794 3
Deletion Chr12 24959017 24959018 1
Deletion Chr4 29950119 29950129 10
Deletion Chr5 30010072 30010425 353
Deletion Chr1 33478372 33478384 12
Deletion Chr1 35329115 35329119 4
Deletion Chr1 41405461 41405463 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9501170	A-T	Hetero	INTERGENIC
SBS	Chr2	782631	T-G	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Hetero	INTERGENIC
SBS	Chr2	5486900	A-G	Hetero	INTERGENIC
SBS	Chr2	6287845	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	6689847	G-A	Hetero	INTERGENIC
SBS	Chr2	6689848	G-A	Hetero	INTERGENIC
SBS	Chr2	27027618	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g269800
SBS	Chr2	30330491	G-T	Homo	INTERGENIC
SBS	Chr2	33725386	G-A	Homo	INTRON
SBS	Chr3	12103680	G-A	Hetero	INTERGENIC
SBS	Chr3	27248578	G-A	Hetero	INTERGENIC
SBS	Chr4	7257041	C-T	Hetero	INTRON
SBS	Chr4	23774746	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g150400
SBS	Chr4	23774747	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g150400
SBS	Chr5	5026612	G-T	Hetero	INTERGENIC
SBS	Chr6	20937327	A-G	Homo	INTRON
SBS	Chr6	29415798	C-T	Hetero	INTERGENIC
SBS	Chr7	8085078	G-C	Homo	INTERGENIC
SBS	Chr8	2978313	C-A	Homo	INTRON
SBS	Chr8	2978314	G-A	Homo	INTRON
SBS	Chr8	5489338	A-C	Homo	INTERGENIC
SBS	Chr8	27774765	A-T	Hetero	INTERGENIC
SBS	Chr8	28141116	A-G	Hetero	INTERGENIC
SBS	Chr9	5806680	G-A	Hetero	INTRON
SBS	Chr9	8783119	A-G	Homo	INTERGENIC
SBS	Chr9	15645790	C-T	Hetero	INTERGENIC
SBS	Chr9	19041918	A-T	Hetero	INTERGENIC
SBS	Chr10	2797718	A-T	Hetero	INTERGENIC
SBS	Chr10	8392097	G-T	Hetero	INTERGENIC
SBS	Chr11	13505635	C-T	Homo	INTERGENIC
SBS	Chr11	13505636	T-C	Homo	INTERGENIC
SBS	Chr11	15714672	A-C	Hetero	INTERGENIC
SBS	Chr11	19443507	A-T	Homo	INTRON
SBS	Chr11	19443508	G-T	Homo	INTRON
SBS	Chr12	16036166	A-G	Hetero	INTERGENIC
SBS	Chr12	18142720	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	588850	588852	2
Deletion	Chr3	624737	624739	2
Deletion	Chr1	2149892	2149895	3
Deletion	Chr11	4311650	4311653	3
Deletion	Chr6	7146808	7146809	1
Deletion	Chr8	10806835	10806909	74
Deletion	Chr2	11200059	11200061	2
Deletion	Chr3	11912029	11912078	49
Deletion	Chr9	12948596	12948602	6
Deletion	Chr3	14302431	14302432	1
Deletion	Chr3	20040046	20040356	310
Deletion	Chr12	20997206	20997208	2
Deletion	Chr1	24861791	24861794	3
Deletion	Chr12	24959017	24959018	1
Deletion	Chr4	29950119	29950129	10
Deletion	Chr5	30010072	30010425	353
Deletion	Chr1	33478372	33478384	12
Deletion	Chr1	35329115	35329119	4
Deletion	Chr1	41405461	41405463	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes