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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	704-6 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download 704-6 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7784021	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr1	7784022	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g13890
SBS	Chr12	6629708	C-A	Homo	INTERGENIC
SBS	Chr9	735097	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g02030

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7746347	7746351	4	LOC_Os01g13810
Deletion	Chr1	7780438	7780440	2	LOC_Os01g13880
Deletion	Chr1	7926885	7926907	22	LOC_Os01g14130
Deletion	Chr9	11957774	11957792	18
Deletion	Chr2	12557084	12557093	9
Deletion	Chr10	14042971	14042990	19
Deletion	Chr9	20731759	20731777	18	LOC_Os09g35980
Deletion	Chr8	27581865	27581872	7
Deletion	Chr1	35105321	35105322	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25200701	25200701	1
Insertion	Chr7	1258693	1258694	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9917766	9932933
Inversion	Chr6	9917786	9932931

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10822846	Chr4	9875152
Translocation	Chr6	26908609	Chr3	9270519	LOC_Os03g16740