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Mutant Information

Mutant Name	CW-631-3-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download CW-631-3-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35563753	G-C	HET	INTERGENIC
SBS	Chr1	835024	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g02540
SBS	Chr10	10126978	A-G	HET	INTRON
SBS	Chr11	4616114	A-G	HET	INTRON
SBS	Chr12	21099614	A-T	HET	INTERGENIC
SBS	Chr12	2293011	G-A	HET	INTERGENIC
SBS	Chr12	26244838	G-T	HET	INTERGENIC
SBS	Chr12	4266649	A-T	HOMO	INTERGENIC
SBS	Chr2	15706974	G-A	HOMO	INTRON
SBS	Chr2	15706975	G-T	HOMO	INTRON
SBS	Chr2	28211932	A-G	HOMO	INTERGENIC
SBS	Chr2	28309002	C-T	HOMO	INTERGENIC
SBS	Chr3	17648050	C-T	HOMO	INTERGENIC
SBS	Chr3	18995145	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	21479777	A-G	HET	INTRON
SBS	Chr4	11957279	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g21210
SBS	Chr4	13953705	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g24350
SBS	Chr4	16253117	C-G	HET	INTERGENIC
SBS	Chr4	21799699	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g35780
SBS	Chr4	22472393	G-A	HOMO	SPLICE_SITE_DONOR	LOC_Os04g37810
SBS	Chr4	25671480	A-T	HOMO	INTERGENIC
SBS	Chr4	7422988	A-G	HET	INTRON
SBS	Chr5	17005141	G-T	HET	INTERGENIC
SBS	Chr5	17161563	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g29690
SBS	Chr5	17713036	C-T	HET	INTERGENIC
SBS	Chr5	20566450	C-T	HET	INTERGENIC
SBS	Chr5	20566453	T-A	HET	INTERGENIC
SBS	Chr5	21345576	C-T	HET	INTERGENIC
SBS	Chr5	26447541	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45630
SBS	Chr5	27162788	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46940
SBS	Chr5	2805418	T-A	HET	INTERGENIC
SBS	Chr5	5273020	C-T	HET	INTERGENIC
SBS	Chr6	121978	G-A	HET	INTRON
SBS	Chr6	14114426	G-T	HOMO	INTERGENIC
SBS	Chr6	23186122	C-A	HET	SYNONYMOUS_CODING
SBS	Chr6	26383494	C-T	HOMO	INTERGENIC
SBS	Chr6	4099960	T-C	HET	INTRON
SBS	Chr7	22685770	C-G	HOMO	INTERGENIC
SBS	Chr7	24005781	C-A	HOMO	INTERGENIC
SBS	Chr7	9947197	G-C	HET	INTRON
SBS	Chr8	1121312	T-C	HET	UTR_3_PRIME
SBS	Chr8	15509767	C-T	HET	INTERGENIC
SBS	Chr8	3015480	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g05640
SBS	Chr9	5249895	C-T	HOMO	SYNONYMOUS_CODING

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	222140	252470	30330	5
Deletion	Chr10	2384055	2384071	16
Deletion	Chr5	2617229	2617231	2	LOC_Os05g05310
Deletion	Chr1	7694893	7694896	3
Deletion	Chr10	9372033	9372040	7	LOC_Os10g18440
Deletion	Chr11	19997450	19997453	3
Deletion	Chr8	21225957	21225961	4
Deletion	Chr10	21972148	21972156	8
Deletion	Chr11	22043088	22043089	1	LOC_Os11g37330
Deletion	Chr8	23859495	23859497	2
Deletion	Chr1	27027854	27027856	2
Deletion	Chr1	27073981	27073983	2
Deletion	Chr5	27532070	27532071	1
Deletion	Chr7	28242704	28242709	5
Deletion	Chr1	33418980	33418986	6	LOC_Os01g57780
Deletion	Chr1	35982104	35982555	451

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	31148113	31148113	1
Insertion	Chr4	18506101	18506101	1
Insertion	Chr5	6074417	6074418	2
Insertion	Chr7	5676264	5676264	1
Insertion	Chr9	5996797	5996797	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4830074	5247232	LOC_Os09g09700
Inversion	Chr9	5247231	7081975	LOC_Os09g09700
Inversion	Chr10	11646694	14742428	LOC_Os10g28330

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	10776825	Chr4	20488252
Translocation	Chr6	10777922	Chr4	20488273
Translocation	Chr8	11601768	Chr4	61838
Translocation	Chr4	18850944	Chr1	35982536
Translocation	Chr4	18850961	Chr1	35982110

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr2	34291247	34291555	308

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