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Mutant Information

Mutant Name	FN-100 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-100 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26457437	C-G	HET	INTRON
SBS	Chr1	33603139	A-G	HOMO	INTRON
SBS	Chr10	7290965	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13490
SBS	Chr11	22267045	T-G	HET	INTERGENIC
SBS	Chr12	21099208	G-A	HOMO	INTERGENIC
SBS	Chr12	3751589	C-T	HOMO	INTERGENIC
SBS	Chr3	12171967	A-T	HET	INTERGENIC
SBS	Chr3	15581488	G-C	HOMO	INTERGENIC
SBS	Chr3	7338024	T-C	HOMO	INTERGENIC
SBS	Chr4	20833084	C-A	HOMO	INTERGENIC
SBS	Chr4	7694364	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13790
SBS	Chr5	26632967	G-A	HET	INTRON
SBS	Chr5	26632968	G-A	HET	INTRON
SBS	Chr6	28032272	T-C	HOMO	INTERGENIC
SBS	Chr7	23812120	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g39730
SBS	Chr8	12143256	T-A	HET	INTRON
SBS	Chr9	11213067	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18260
SBS	Chr9	16548385	A-G	HET	INTRON
SBS	Chr9	16649712	T-G	HET	INTRON
SBS	Chr9	3462914	G-A	HOMO	INTRON
SBS	Chr9	9950753	G-A	HOMO	INTRON
SBS	Chr9	9950754	G-A	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	206390	206392	2
Deletion	Chr9	551138	551141	3
Deletion	Chr9	2900675	2900691	16
Deletion	Chr9	5023001	5083000	60000	7
Deletion	Chr5	6699683	6699691	8
Deletion	Chr1	6796203	6796205	2
Deletion	Chr1	9177630	9177632	2
Deletion	Chr9	9222495	9222496	1
Deletion	Chr1	9906310	9906314	4
Deletion	Chr2	10074733	10074739	6	LOC_Os02g17500
Deletion	Chr8	11308989	11308992	3
Deletion	Chr8	11473363	11473364	1
Deletion	Chr12	12079394	12079402	8	LOC_Os12g21500
Deletion	Chr11	14309180	14309187	7
Deletion	Chr9	15024634	15024639	5
Deletion	Chr7	16416143	16416146	3
Deletion	Chr5	18965497	18965533	36	LOC_Os05g32470
Deletion	Chr4	23983124	23983131	7
Deletion	Chr11	24570374	24570391	17
Deletion	Chr4	26088878	26088879	1
Deletion	Chr12	27040159	27040160	1
Deletion	Chr6	28084001	28180000	96000	12
Deletion	Chr5	28136091	28136103	12
Deletion	Chr4	30425712	30425718	6

Insertions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11545605	11545606	2
Insertion	Chr1	23308315	23308320	6
Insertion	Chr1	23572413	23572414	2
Insertion	Chr1	26649035	26649035	1
Insertion	Chr1	35237639	35237646	8
Insertion	Chr1	40468997	40468999	3
Insertion	Chr11	14361450	14361450	1
Insertion	Chr11	20246983	20246983	1	LOC_Os11g34590
Insertion	Chr11	27699077	27699078	2
Insertion	Chr12	4445173	4445173	1
Insertion	Chr12	8085373	8085376	4
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810
Insertion	Chr2	16479231	16479242	12
Insertion	Chr2	18552323	18552324	2
Insertion	Chr2	24228585	24228590	6	LOC_Os02g40010
Insertion	Chr2	29896930	29896937	8
Insertion	Chr2	4064087	4064088	2
Insertion	Chr3	30631961	30631961	1
Insertion	Chr4	33475327	33475340	14
Insertion	Chr4	34230146	34230147	2
Insertion	Chr5	5291967	5291967	1
Insertion	Chr6	22279922	22279923	2
Insertion	Chr6	24037839	24037842	4
Insertion	Chr6	29472167	29472168	2
Insertion	Chr7	23386232	23386233	2
Insertion	Chr8	16099831	16099832	2
Insertion	Chr8	20070781	20070782	2
Insertion	Chr9	15169579	15169580	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4667790	7267334

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	27136537	Chr3	8253979

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