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Mutant Information

Mutant Name	FN-101 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-101 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1007746	G-A	HOMO	INTERGENIC
SBS	Chr2	1007747	T-A	HOMO	INTERGENIC
SBS	Chr2	3817750	A-T	HOMO	INTERGENIC
SBS	Chr2	35857903	A-T	HET	INTRON
SBS	Chr3	8660589	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15700
SBS	Chr3	18124810	G-T	HET	INTRON
SBS	Chr3	24182061	G-A	HET	INTERGENIC
SBS	Chr3	29943847	G-A	HET	INTRON
SBS	Chr4	24004	T-G	HOMO	INTRON
SBS	Chr4	731213	A-C	HOMO	INTERGENIC
SBS	Chr4	13449686	G-C	HOMO	INTERGENIC
SBS	Chr4	30535883	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr5	11525573	G-T	HET	INTRON
SBS	Chr5	28248991	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49230
SBS	Chr6	14414826	A-G	HET	INTRON
SBS	Chr6	25598911	G-A	HOMO	INTERGENIC
SBS	Chr7	11838503	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g20500
SBS	Chr8	1433231	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03130
SBS	Chr8	10397201	G-A	HET	INTERGENIC
SBS	Chr8	14975239	C-A	HET	INTERGENIC
SBS	Chr9	1642574	G-A	HET	INTERGENIC
SBS	Chr9	8339132	G-A	HET	INTERGENIC
SBS	Chr9	9225941	G-A	HET	INTERGENIC
SBS	Chr9	12058290	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g20120
SBS	Chr9	14683352	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24670
SBS	Chr9	14683353	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	16592052	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27290
SBS	Chr10	4711945	C-T	HET	INTRON
SBS	Chr10	7292388	C-T	HET	INTRON
SBS	Chr10	8771288	G-A	HET	INTRON
SBS	Chr10	10298295	A-T	HET	INTRON
SBS	Chr11	2723397	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g05840
SBS	Chr11	7467996	A-C	HET	INTRON
SBS	Chr11	20142735	C-G	HET	INTRON
SBS	Chr12	13580366	T-C	HOMO	INTERGENIC
SBS	Chr12	24539957	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	594354	594358	4	LOC_Os04g01950
Deletion	Chr2	1054834	1054835	1
Deletion	Chr9	5576772	5576777	5
Deletion	Chr8	9043107	9043123	16	LOC_Os08g14990
Deletion	Chr4	9650840	9650841	1
Deletion	Chr1	10353581	10353582	1
Deletion	Chr5	10640184	10640185	1
Deletion	Chr11	11023347	11023363	16
Deletion	Chr9	14150143	14150144	1
Deletion	Chr9	14526040	14526046	6
Deletion	Chr11	14995103	14995114	11
Deletion	Chr2	15189151	15189157	6
Deletion	Chr7	15882754	15882755	1
Deletion	Chr6	17381786	17381787	1
Deletion	Chr6	18071108	18071127	19
Deletion	Chr12	18359156	18359158	2
Deletion	Chr7	20785138	20785149	11
Deletion	Chr10	21072176	21072183	7
Deletion	Chr7	22207950	22207952	2
Deletion	Chr2	25937298	25937309	11	LOC_Os02g43070
Deletion	Chr4	30535984	30535985	1	LOC_Os04g51540
Deletion	Chr2	30686697	30686698	1
Deletion	Chr3	35328956	35329048	92

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	14740466	14740466	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10763445	12844188
Inversion	Chr10	12844176	20818783
Inversion	Chr6	18205986	19541549	LOC_Os06g33549
Inversion	Chr6	28834746	28856181	2
Inversion	Chr6	28856182	29493270	LOC_Os06g47650

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	23188874	Chr6	29493264
Translocation	Chr11	23188890	Chr6	28834784	LOC_Os06g47620

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