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Mutant Information

Mutant Name	FN-13 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-13 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34432688	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g59550
SBS	Chr3	4216246	T-C	HOMO	INTERGENIC
SBS	Chr3	32183255	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g56470
SBS	Chr3	32183256	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	1428248	C-T	HOMO	INTERGENIC
SBS	Chr5	26553470	G-A	HOMO	INTERGENIC
SBS	Chr5	27006277	C-G	HOMO	INTRON
SBS	Chr5	28117991	C-T	HET	INTERGENIC
SBS	Chr5	28227595	C-A	HET	UTR_3_PRIME
SBS	Chr6	7905511	T-C	HET	INTERGENIC
SBS	Chr6	27600249	T-C	HOMO	INTERGENIC
SBS	Chr7	6889642	G-A	HET	INTERGENIC
SBS	Chr7	7537271	A-G	HET	INTERGENIC
SBS	Chr7	7605918	A-G	HET	INTERGENIC
SBS	Chr8	695114	C-T	HET	INTERGENIC
SBS	Chr8	10660800	C-T	HET	INTERGENIC
SBS	Chr9	2223683	A-G	HET	INTERGENIC
SBS	Chr9	3524223	A-T	HET	INTERGENIC
SBS	Chr9	3524227	C-A	HET	INTERGENIC
SBS	Chr11	16214207	G-A	HOMO	INTERGENIC
SBS	Chr12	4229865	A-G	HET	INTERGENIC
SBS	Chr12	8181001	A-G	HET	INTRON
SBS	Chr12	21433094	C-T	HET	INTRON
SBS	Chr3	4216246	T-C	Homo	INTERGENIC
SBS	Chr3	32183255	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g56470
SBS	Chr3	32183256	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	1428248	C-T	Homo	INTERGENIC
SBS	Chr5	26553470	G-A	Homo	INTERGENIC
SBS	Chr5	27006277	C-G	Homo	INTRON
SBS	Chr6	27600249	T-C	Homo	INTERGENIC
SBS	Chr11	16214207	G-A	Homo	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	498724	498725	1
Deletion	Chr11	2068509	2068566	57	LOC_Os11g04860
Deletion	Chr10	3478370	3478371	1
Deletion	Chr8	3664217	3664258	41
Deletion	Chr9	4741880	4741882	2
Deletion	Chr8	4975866	4975875	9
Deletion	Chr3	5180534	5180535	1
Deletion	Chr8	9390835	9390879	44
Deletion	Chr5	11620670	11620678	8	LOC_Os05g19920
Deletion	Chr4	11802533	11802537	4
Deletion	Chr11	13091414	13091415	1
Deletion	Chr6	17357965	17358391	426	LOC_Os06g30110
Deletion	Chr2	17569743	17569753	10
Deletion	Chr10	18683254	18683259	5	LOC_Os10g35020
Deletion	Chr1	19336413	19336414	1
Deletion	Chr4	24070863	24070884	21	LOC_Os04g40520
Deletion	Chr2	26395001	26424000	29000	6
Deletion	Chr1	27917120	27917131	11
Deletion	Chr7	29524416	29524417	1	LOC_Os07g49300
Deletion	Chr2	29602452	29602470	18
Deletion	Chr2	30357939	30357940	1
Deletion	Chr4	35102250	35102258	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	11697414	11697415	2
Insertion	Chr9	18860673	18860673	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6828848	9036485	LOC_Os03g12760
Inversion	Chr11	22017719	22136667	LOC_Os11g37280
Inversion	Chr11	22017733	22136667	LOC_Os11g37280
Inversion	Chr2	26082213	26394424	2
Inversion	Chr2	26082227	26424143	LOC_Os02g43280

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	12883297	Chr8	18114123	LOC_Os08g29540
Translocation	Chr10	12886575	Chr8	18114124	2
Translocation	Chr11	20024974	Chr7	4983063

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