Search Results
| Mutant Information |
|---|
| Mutant Name | FN-160 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-160 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4130793 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 36862097 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 2213354 | A-T | HOMO | INTRON | |
| SBS | Chr2 | 7153420 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 24162637 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 2050856 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 26374899 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g46590 |
| SBS | Chr4 | 1636523 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 17676636 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 23573629 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 25879995 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 33387303 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g56060 |
| SBS | Chr5 | 5704738 | T-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 3651661 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 20420896 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g34140 |
| SBS | Chr7 | 27995645 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 19649931 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 12475124 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 18913044 | A-C | HET | INTERGENIC | |
| SBS | Chr9 | 19167831 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr10 | 12373116 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24150 |
| SBS | Chr10 | 15824395 | T-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 799346 | T-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 11423503 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr12 | 9900328 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g17290 |
| SBS | Chr12 | 13167244 | A-G | HOMO | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 358236 | 358239 | 3 | |
| Deletion | Chr11 | 747458 | 747469 | 11 | LOC_Os11g02464 |
| Deletion | Chr6 | 5455484 | 5455486 | 2 | |
| Deletion | Chr11 | 5693427 | 5693428 | 1 | |
| Deletion | Chr5 | 8854001 | 8917000 | 63000 | 14 |
| Deletion | Chr8 | 9352684 | 9352685 | 1 | |
| Deletion | Chr6 | 11489485 | 11489486 | 1 | |
| Deletion | Chr8 | 12858374 | 12858377 | 3 | |
| Deletion | Chr2 | 13813151 | 13813157 | 6 | |
| Deletion | Chr11 | 14492187 | 14492190 | 3 | |
| Deletion | Chr10 | 14663738 | 14663739 | 1 | |
| Deletion | Chr6 | 16566001 | 16787000 | 221000 | 30 |
| Deletion | Chr1 | 17533809 | 17533810 | 1 | LOC_Os01g32020 |
| Deletion | Chr9 | 19954171 | 19954177 | 6 | |
| Deletion | Chr1 | 21328001 | 21627000 | 299000 | 35 |
| Deletion | Chr10 | 21903280 | 21903283 | 3 | |
| Deletion | Chr5 | 23622262 | 23622267 | 5 | |
| Deletion | Chr12 | 23711979 | 23711991 | 12 | |
| Deletion | Chr1 | 42561632 | 42561633 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 21416340 | 21416340 | 1 | |
| Insertion | Chr5 | 5637477 | 5637478 | 2 | |
| Insertion | Chr11 | 9812307 | 9812308 | 2 | |
| Insertion | Chr9 | 13872068 | 13872068 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 8948503 | 9920238 | LOC_Os05g15850 |
| Inversion | Chr10 | 14807631 | 14965542 |
No Translocation