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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21986547	G-A	HET	INTERGENIC
SBS	Chr10	5202116	T-A	HET	INTRON
SBS	Chr11	16233686	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28230
SBS	Chr11	16464038	T-A	HET	INTERGENIC
SBS	Chr11	16762423	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28970
SBS	Chr12	14691080	T-A	HOMO	INTERGENIC
SBS	Chr12	17035098	T-A	HET	INTRON
SBS	Chr12	17035099	G-T	HET	INTRON
SBS	Chr12	17949163	G-C	HET	INTERGENIC
SBS	Chr12	19804315	G-A	HET	INTERGENIC
SBS	Chr12	21739452	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35720
SBS	Chr12	23898820	T-A	HET	INTERGENIC
SBS	Chr12	3052894	A-C	HET	INTRON
SBS	Chr12	7417691	G-A	HOMO	INTERGENIC
SBS	Chr2	21975764	A-C	HET	INTERGENIC
SBS	Chr3	16156054	A-T	HET	INTERGENIC
SBS	Chr3	24374368	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	28122786	A-T	HET	INTRON
SBS	Chr3	5925808	A-G	HET	INTRON
SBS	Chr3	6506541	G-A	HOMO	INTERGENIC
SBS	Chr4	24653259	G-A	HET	INTERGENIC
SBS	Chr4	28199773	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g47550
SBS	Chr4	28199774	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g47550
SBS	Chr4	34803794	G-A	HOMO	INTERGENIC
SBS	Chr4	6819455	C-G	HET	INTERGENIC
SBS	Chr5	15867441	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27304
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr6	2094578	C-T	HET	UTR_5_PRIME
SBS	Chr7	12422921	C-T	HET	INTERGENIC
SBS	Chr7	14389256	G-C	HET	INTRON
SBS	Chr7	16637049	C-A	HET	INTERGENIC
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	24982855	C-A	HOMO	INTERGENIC
SBS	Chr7	9945279	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16910
SBS	Chr8	1191630	A-G	HET	INTERGENIC
SBS	Chr9	1314546	C-G	HET	INTERGENIC
SBS	Chr9	15513151	T-A	HET	INTERGENIC
SBS	Chr9	754936	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	342991	342995	4
Deletion	Chr3	2160001	2355000	195000	27
Deletion	Chr5	4497231	4497240	9
Deletion	Chr5	6515867	6515870	3
Deletion	Chr9	7078115	7079070	955	LOC_Os09g12380
Deletion	Chr5	7926073	7926074	1
Deletion	Chr11	8616001	8930000	314000	49
Deletion	Chr8	8831171	8831182	11
Deletion	Chr8	8832291	8832293	2
Deletion	Chr12	10468375	10468384	9	LOC_Os12g18150
Deletion	Chr8	10561132	10561148	16
Deletion	Chr5	12350292	12350299	7
Deletion	Chr4	13218949	13218950	1
Deletion	Chr12	15188931	15188932	1
Deletion	Chr4	18043800	18043801	1	LOC_Os04g30240
Deletion	Chr3	18498853	18498855	2
Deletion	Chr7	19543317	19543343	26
Deletion	Chr9	19581297	19581302	5
Deletion	Chr4	27065923	27065929	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	28173836	28173836	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1980739	2159848	LOC_Os03g04620
Inversion	Chr5	15032693	17590343
Inversion	Chr5	17357197	17590339

No Translocation

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