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Mutant Information

Mutant Name	FN-177 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-177 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1817219	A-G	HET	INTRON
SBS	Chr1	6835820	G-T	HET	INTERGENIC
SBS	Chr10	19289658	C-A	HOMO	INTERGENIC
SBS	Chr10	20960731	C-T	HET	INTERGENIC
SBS	Chr11	12991075	G-A	HET	INTRON
SBS	Chr11	27124282	C-T	HET	INTERGENIC
SBS	Chr12	20952341	T-A	HOMO	INTERGENIC
SBS	Chr3	12853043	A-T	HET	INTERGENIC
SBS	Chr4	1031459	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02700
SBS	Chr4	17026	A-T	HET	INTERGENIC
SBS	Chr4	27592061	G-A	HOMO	INTERGENIC
SBS	Chr4	32768385	G-A	HET	INTERGENIC
SBS	Chr5	12938607	T-G	HET	INTERGENIC
SBS	Chr5	196740	A-G	HET	INTRON
SBS	Chr6	29003482	A-G	HET	UTR_5_PRIME
SBS	Chr7	26959170	A-T	HOMO	INTRON
SBS	Chr8	835779	C-A	HOMO	INTERGENIC
SBS	Chr8	9884691	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	8540362	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14450

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	359426	359429	3
Deletion	Chr5	3684294	3684309	15
Deletion	Chr8	8978087	8978097	10
Deletion	Chr3	10063820	10063825	5
Deletion	Chr2	11485660	11485687	27
Deletion	Chr6	13521722	13521723	1	LOC_Os06g23160
Deletion	Chr3	16640744	16640763	19
Deletion	Chr10	19293555	19293557	2
Deletion	Chr8	20558560	20558561	1
Deletion	Chr7	26086668	26086676	8
Deletion	Chr7	29538767	29538774	7	LOC_Os07g49320

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2205708	2205711	4
Insertion	Chr12	17485054	17485057	4
Insertion	Chr4	10339071	10339071	1
Insertion	Chr6	23543748	23543750	3
Insertion	Chr8	20060639	20060644	6

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1954744	Chr4	21324005	LOC_Os04g35080