Search Results

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-185 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-185 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	19516162	A-T	HET	INTERGENIC
SBS	Chr2	20953090	C-T	HET	INTERGENIC
SBS	Chr2	25835136	G-T	HET	INTERGENIC
SBS	Chr2	33657148	T-A	HET	INTERGENIC
SBS	Chr3	21763940	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	13015660	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g22930
SBS	Chr4	30728496	C-T	HET	INTERGENIC
SBS	Chr5	6095206	C-T	HET	INTERGENIC
SBS	Chr5	8927453	G-C	HET	INTERGENIC
SBS	Chr5	14828039	A-C	HET	INTERGENIC
SBS	Chr6	24735013	T-A	HET	INTRON
SBS	Chr8	603252	C-A	HOMO	INTERGENIC
SBS	Chr8	7259900	C-T	HOMO	INTERGENIC
SBS	Chr8	22233989	T-C	HET	INTERGENIC
SBS	Chr9	3608840	G-A	HET	INTERGENIC
SBS	Chr9	13407969	G-T	HET	INTRON
SBS	Chr9	13407970	A-T	HET	INTRON
SBS	Chr10	6164749	G-A	HET	INTERGENIC
SBS	Chr10	13806450	A-T	HET	UTR_3_PRIME
SBS	Chr10	17343288	A-T	HOMO	INTERGENIC
SBS	Chr11	979282	T-G	HOMO	INTRON
SBS	Chr11	1195852	A-T	HOMO	INTERGENIC
SBS	Chr11	8866668	G-A	HET	INTRON
SBS	Chr11	8866669	T-A	HET	INTRON
SBS	Chr11	12622153	A-G	HET	INTRON
SBS	Chr11	25173574	C-T	HET	UTR_3_PRIME
SBS	Chr12	12677687	A-G	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	371329	371337	8	LOC_Os03g01590
Deletion	Chr11	640009	640014	5
Deletion	Chr9	2064343	2068656	4313
Deletion	Chr3	2430873	2430888	15
Deletion	Chr8	4038998	4039008	10	LOC_Os08g07240
Deletion	Chr4	4462724	4462725	1
Deletion	Chr7	5718198	5718199	1
Deletion	Chr8	10329993	10329996	3
Deletion	Chr8	10559806	10559821	15
Deletion	Chr2	10593382	10593409	27
Deletion	Chr2	16190924	16190925	1
Deletion	Chr9	18152683	18152698	15	LOC_Os09g29840
Deletion	Chr2	19516166	19516173	7
Deletion	Chr6	20979471	20979485	14
Deletion	Chr7	21704001	21737000	33000	6
Deletion	Chr6	24538866	24538876	10
Deletion	Chr6	24652001	24672000	20000	3
Deletion	Chr3	26781998	26782016	18
Deletion	Chr3	31786653	31786666	13	LOC_Os03g55830

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	23533365	23533365	1
Insertion	Chr3	16074788	16074788	1
Insertion	Chr4	20542100	20542100	1

No Inversion

No Translocation

Main menu