Search Nipponbare

Mutant Information

Mutant Name	FN-257 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-257 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15043653	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr1	22257673	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	24500602	G-A	HET	INTRON
SBS	Chr1	32216903	T-A	HET	INTERGENIC
SBS	Chr1	9186796	C-T	HET	INTERGENIC
SBS	Chr1	9535255	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g16780
SBS	Chr12	14163548	A-G	HET	INTERGENIC
SBS	Chr12	18848325	A-G	HET	INTERGENIC
SBS	Chr12	24773504	T-G	HOMO	INTERGENIC
SBS	Chr12	26900489	C-T	HOMO	INTERGENIC
SBS	Chr3	16011672	G-T	HET	INTRON
SBS	Chr3	18966160	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33160
SBS	Chr3	19452706	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	35863362	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g63480
SBS	Chr4	24150247	A-G	HOMO	INTERGENIC
SBS	Chr4	35460686	A-T	HOMO	INTERGENIC
SBS	Chr4	9221395	C-T	HET	INTERGENIC
SBS	Chr5	8342190	C-A	HET	INTERGENIC
SBS	Chr6	13737072	C-G	HET	INTERGENIC
SBS	Chr6	17931790	C-T	HET	INTERGENIC
SBS	Chr6	1899335	G-A	HET	INTERGENIC
SBS	Chr6	29353189	T-G	HET	INTRON
SBS	Chr7	17023233	T-C	HOMO	INTERGENIC
SBS	Chr7	1860528	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g04230
SBS	Chr7	2869208	A-G	HOMO	INTERGENIC
SBS	Chr7	5060176	A-T	HOMO	INTERGENIC
SBS	Chr8	13627985	T-C	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	873806	873818	12	LOC_Os06g02520
Deletion	Chr6	1032187	1032188	1
Deletion	Chr6	2402904	2402905	1
Deletion	Chr6	4306195	4306200	5
Deletion	Chr10	7008948	7008949	1
Deletion	Chr4	7255123	7255149	26	LOC_Os04g13150
Deletion	Chr9	7503858	7503859	1
Deletion	Chr5	8313745	8313746	1
Deletion	Chr3	8956119	8956121	2
Deletion	Chr2	9924093	9950870	26777	3
Deletion	Chr2	10369151	10369158	7
Deletion	Chr5	11041001	11101000	60000	10
Deletion	Chr5	11126001	11570000	444000	64
Deletion	Chr5	11594001	12074000	480000	66
Deletion	Chr7	13058860	13058861	1
Deletion	Chr7	16763969	16764480	511	LOC_Os07g28640
Deletion	Chr7	17539680	17542249	2569
Deletion	Chr10	18140683	18140703	20
Deletion	Chr10	20775984	20775996	12
Deletion	Chr5	22065234	22065267	33
Deletion	Chr7	22209303	22209308	5
Deletion	Chr4	22311314	22311321	7
Deletion	Chr9	22834486	22834487	1	LOC_Os09g39820
Deletion	Chr12	24120965	24120984	19	LOC_Os12g39180
Deletion	Chr2	33774001	33830000	56000	13
Deletion	Chr2	35901995	35902000	5	LOC_Os02g58770

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	113966	113966	1
Insertion	Chr2	12473740	12473740	1
Insertion	Chr2	31208764	31208764	1
Insertion	Chr4	17697396	17697396	1
Insertion	Chr5	25961542	25961542	1
Insertion	Chr5	4809099	4809101	3
Insertion	Chr6	27018392	27018392	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11331700	Chr1	4670915
Translocation	Chr7	16763981	Chr5	11327969	LOC_Os07g28640
Translocation	Chr7	16764476	Chr1	4670922	LOC_Os07g28640

Main menu