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Mutant Information

Mutant NameFN-288 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-288 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 34
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121700157C-GHOMOINTRON
SBSChr1014939875C-THETINTERGENIC
SBSChr101496875G-AHETINTERGENIC
SBSChr101964329A-THETINTERGENIC
SBSChr105903637G-AHETINTERGENIC
SBSChr106340935A-THETINTRON
SBSChr106340936A-THETINTRON
SBSChr106340938C-THETINTRON
SBSChr106347292C-THETSYNONYMOUS_CODING
SBSChr111414656A-CHETINTERGENIC
SBSChr1116040093T-AHETINTERGENIC
SBSChr1121168940C-THETINTERGENIC
SBSChr1211337078G-AHETINTERGENIC
SBSChr1218201695G-CHOMOINTERGENIC
SBSChr1219180588T-GHOMOINTERGENIC
SBSChr122596696C-THETINTRON
SBSChr123552594T-AHETUTR_3_PRIME
SBSChr128977313A-CHETINTERGENIC
SBSChr221868229T-AHETNON_SYNONYMOUS_CODINGLOC_Os02g36230
SBSChr22791140C-THETINTERGENIC
SBSChr331077149C-AHETINTERGENIC
SBSChr416781499C-AHETINTERGENIC
SBSChr422256513A-THOMOINTERGENIC
SBSChr47385481C-AHETINTERGENIC
SBSChr52277995T-CHETNON_SYNONYMOUS_CODINGLOC_Os05g04790
SBSChr611236786A-THOMOINTERGENIC
SBSChr79342439C-THOMOINTERGENIC
SBSChr813312423C-THETSYNONYMOUS_CODING
SBSChr820642112G-THETINTERGENIC
SBSChr823621992C-THOMOINTERGENIC
SBSChr826364505C-THETINTERGENIC
SBSChr83645799A-THETINTERGENIC
SBSChr84413697T-CHETINTRON
SBSChr94125073C-THETINTERGENIC

Deletions: 24
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr95606195606212LOC_Os09g01810
DeletionChr10145459914546078
DeletionChr135838023595138113362
DeletionChr54347001452500017800026
DeletionChr105108743510876017LOC_Os10g09470
DeletionChr8725643772564414
DeletionChr6734623773462403LOC_Os06g13360
DeletionChr118836279883630526
DeletionChr413051107130511092LOC_Os04g22990
DeletionChr613772387137723881LOC_Os06g23610
DeletionChr5159915991599162425
DeletionChr916646238166462479LOC_Os09g27390
DeletionChr117482111174821121
DeletionChr1018036051180400614010LOC_Os10g33930
DeletionChr218745749187457501
DeletionChr719026030190260322
DeletionChr8229372112295539118180
DeletionChr626298682262986853
DeletionChr12273334552733347621
DeletionChr227488567274885692LOC_Os02g45250
DeletionChr227656410276564177
DeletionChr427753065277530661
DeletionChr127888068278880724LOC_Os01g48650
DeletionChr229819422298194253

Insertions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr112717709127177091
InsertionChr11708773070877312
InsertionChr212864063128640664
InsertionChr34597194597191
InsertionChr426251100262511001LOC_Os04g44320image
InsertionChr43685823685854
InsertionChr712108498121085003
InsertionChr820145118201451269LOC_Os08g32520image
InsertionChr826805875268058784
InsertionChr9897400589740062

Inversions: 3
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr56126479189651962
InversionChr22169824421860440LOC_Os02g36220
InversionChr22169826721860530LOC_Os02g36220

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111002062Chr259446072
TranslocationChr79757780Chr43713103
TranslocationChr411551033Chr217320461
TranslocationChr1225824844Chr11269276
TranslocationChr1225824852Chr11281057