Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-291 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-291 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12988947 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 20396361 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 21312172 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 30770757 | G-C | HOMO | INTRON | |
| SBS | Chr1 | 35692269 | G-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 11481378 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 242952 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 8506506 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g16990 |
| SBS | Chr11 | 10329231 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 22384022 | G-A | HET | INTRON | |
| SBS | Chr2 | 11465351 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 13579590 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 16655976 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 13093062 | A-G | HOMO | INTRON | |
| SBS | Chr3 | 36055377 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 13966441 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 17236445 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 35029089 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 8136310 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g14540 |
| SBS | Chr5 | 11915610 | T-A | HET | INTRON | |
| SBS | Chr5 | 19559522 | A-G | HET | INTRON | |
| SBS | Chr6 | 22104280 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37400 |
| SBS | Chr6 | 6334802 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 12364861 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22120 |
| SBS | Chr7 | 13308060 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 14221291 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 12311842 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 12311843 | C-G | HET | UTR_5_PRIME | |
| SBS | Chr8 | 14673600 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 935873 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 14887831 | G-T | HET | INTRON | |
| SBS | Chr9 | 14963673 | G-A | HET | INTERGENIC |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1545387 | 1545398 | 11 | LOC_Os02g03690 |
| Deletion | Chr1 | 2092807 | 2092808 | 1 | |
| Deletion | Chr2 | 2366928 | 2366929 | 1 | |
| Deletion | Chr6 | 4936001 | 4964000 | 28000 | 5 |
| Deletion | Chr9 | 5765019 | 5765025 | 6 | |
| Deletion | Chr8 | 6421428 | 6421443 | 15 | |
| Deletion | Chr5 | 6889617 | 6889618 | 1 | |
| Deletion | Chr2 | 8133984 | 8133989 | 5 | |
| Deletion | Chr10 | 8808661 | 8808662 | 1 | |
| Deletion | Chr4 | 9054212 | 9054213 | 1 | |
| Deletion | Chr4 | 10499262 | 10499263 | 1 | |
| Deletion | Chr1 | 12911491 | 12911497 | 6 | |
| Deletion | Chr6 | 14414961 | 14414962 | 1 | |
| Deletion | Chr7 | 16058521 | 16058523 | 2 | |
| Deletion | Chr1 | 22199001 | 22329000 | 130000 | 17 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 2369 | 2369 | 1 | |
| Insertion | Chr2 | 28040691 | 28040693 | 3 | |
| Insertion | Chr3 | 4308371 | 4308371 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 10669020 | 13241709 | LOC_Os01g23580 |
| Inversion | Chr1 | 22329617 | 23284740 | |
| Inversion | Chr6 | 26051474 | 26205753 | |
| Inversion | Chr6 | 26051488 | 26205788 |
No Translocation