Search Nipponbare

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-304 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-304 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40959654	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g70760
SBS	Chr1	41558553	T-G	HET	INTRON
SBS	Chr1	6715658	G-T	HOMO	INTERGENIC
SBS	Chr10	10514701	C-T	HET	STOP_GAINED	LOC_Os10g20750
SBS	Chr10	15687337	G-A	HET	INTERGENIC
SBS	Chr10	15972716	G-A	HET	INTERGENIC
SBS	Chr10	6999689	A-C	HET	INTRON
SBS	Chr11	15990726	A-T	HET	INTERGENIC
SBS	Chr11	20306576	G-A	HET	INTRON
SBS	Chr11	21563474	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	9995257	G-T	HET	INTRON
SBS	Chr12	14362037	C-A	HOMO	INTRON
SBS	Chr2	24024939	C-T	HET	INTERGENIC
SBS	Chr2	5192179	A-G	HOMO	INTERGENIC
SBS	Chr3	30559429	G-A	HET	INTERGENIC
SBS	Chr3	7872432	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g14500
SBS	Chr4	15236262	T-G	HET	INTERGENIC
SBS	Chr4	27690026	C-T	HOMO	INTERGENIC
SBS	Chr5	12145728	T-G	HET	INTRON
SBS	Chr5	17507678	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30210
SBS	Chr5	9743899	G-T	HET	INTERGENIC
SBS	Chr5	9743900	A-T	HET	INTERGENIC
SBS	Chr9	16029429	C-A	HET	UTR_3_PRIME
SBS	Chr9	2525604	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g04740

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4343267	4343280	13
Deletion	Chr6	6682192	6682207	15
Deletion	Chr10	7019352	7019360	8
Deletion	Chr7	7942646	7942665	19
Deletion	Chr6	10006800	10006804	4	LOC_Os06g17280
Deletion	Chr12	13677805	13677815	10
Deletion	Chr12	13818735	13819677	942	LOC_Os12g24250
Deletion	Chr12	14915001	14929000	14000	2
Deletion	Chr10	15459217	15459219	2	LOC_Os10g29730
Deletion	Chr4	19115424	19115425	1
Deletion	Chr11	23468675	23468676	1
Deletion	Chr5	25445490	25445494	4
Deletion	Chr4	29680647	29680649	2
Deletion	Chr1	30375569	30375570	1	LOC_Os01g52790
Deletion	Chr3	30654998	30655005	7
Deletion	Chr2	31897686	31897687	1
Deletion	Chr1	38791362	38791386	24

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	16074788	16074788	1
Insertion	Chr7	26263863	26263863	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3672508	3761723	LOC_Os07g07540
Inversion	Chr11	11908372	11921615	LOC_Os11g20554
Inversion	Chr12	14915710	14939454	LOC_Os12g25720
Inversion	Chr12	14929134	14939461

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13819651	Chr7	3672508	LOC_Os12g24250

Main menu