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Mutant Information

Mutant Name	FN-313 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-313 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24596186	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43110
SBS	Chr1	28149236	G-A	HET	INTERGENIC
SBS	Chr1	39162760	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g67420
SBS	Chr2	14711854	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	20883541	A-C	HET	INTRON
SBS	Chr3	3913794	G-A	HET	INTERGENIC
SBS	Chr3	6867558	T-C	HET	INTERGENIC
SBS	Chr3	31553527	A-T	HOMO	INTERGENIC
SBS	Chr4	10630449	C-T	HET	INTERGENIC
SBS	Chr4	17652934	C-T	HET	INTERGENIC
SBS	Chr4	18943570	A-G	HET	INTERGENIC
SBS	Chr4	29497075	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49430
SBS	Chr5	6707014	C-T	HET	INTERGENIC
SBS	Chr5	12098166	A-G	HET	INTRON
SBS	Chr5	19460540	G-A	HET	INTERGENIC
SBS	Chr6	3497700	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g07290
SBS	Chr8	20557816	A-G	HET	UTR_3_PRIME
SBS	Chr10	18495024	A-G	HET	INTRON
SBS	Chr11	7008630	T-C	HOMO	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1531121	1531124	3
Deletion	Chr9	4349164	4349165	1
Deletion	Chr6	5605912	5605924	12
Deletion	Chr2	6932882	6932890	8
Deletion	Chr12	7247649	7247650	1
Deletion	Chr6	7463460	7463461	1
Deletion	Chr12	7735347	7735388	41
Deletion	Chr11	7764001	7770000	6000
Deletion	Chr1	10100770	10100790	20
Deletion	Chr12	10333475	10333477	2	LOC_Os12g17990
Deletion	Chr1	10792001	11301000	509000	73
Deletion	Chr12	10834539	10834540	1
Deletion	Chr1	11303001	11471000	168000	27
Deletion	Chr7	14834729	14834739	10
Deletion	Chr11	17738001	17814000	76000	7
Deletion	Chr4	21319502	21319503	1
Deletion	Chr10	21712522	21712549	27
Deletion	Chr11	24669740	24669746	6
Deletion	Chr1	24909060	24909063	3	LOC_Os01g43510
Deletion	Chr8	25776332	25776336	4
Deletion	Chr1	29969212	29969213	1	LOC_Os01g52110

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	3959845	3959846	2
Insertion	Chr5	11425184	11425184	1

No Inversion

No Translocation

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