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Mutant Information |
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Mutant Name | FN-327 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-327 Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 23
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr3 | 20145042 | G-T | HET | INTERGENIC | |
SBS | Chr3 | 24508203 | T-A | HOMO | INTERGENIC | |
SBS | Chr4 | 18560322 | C-T | HET | UTR_3_PRIME | |
SBS | Chr4 | 20323978 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 25730618 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g43490 |
SBS | Chr4 | 31653128 | G-T | HET | STOP_GAINED | LOC_Os04g53150 |
SBS | Chr5 | 4794471 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 10064991 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 6801481 | A-C | HOMO | INTERGENIC | |
SBS | Chr6 | 15804916 | T-C | HET | INTRON | |
SBS | Chr6 | 15804918 | A-T | HET | INTRON | |
SBS | Chr6 | 24180715 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 13044831 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 6423652 | A-G | HET | INTERGENIC | |
SBS | Chr8 | 7516616 | T-C | HOMO | INTERGENIC | |
SBS | Chr9 | 5190394 | T-A | HET | INTERGENIC | |
SBS | Chr9 | 7095537 | T-C | HET | INTERGENIC | |
SBS | Chr9 | 17653367 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g29070 |
SBS | Chr10 | 1895170 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 3458637 | T-A | HOMO | INTERGENIC | |
SBS | Chr11 | 28723639 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g47500 |
SBS | Chr12 | 13475529 | C-T | HOMO | INTERGENIC | |
SBS | Chr12 | 13475530 | G-T | HOMO | INTERGENIC |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 11073806 | 11073819 | 13 | |
Deletion | Chr11 | 11518001 | 11629000 | 111000 | 11 |
Deletion | Chr6 | 16192228 | 16192231 | 3 | |
Deletion | Chr8 | 17537829 | 17537830 | 1 | |
Deletion | Chr2 | 19409939 | 19494633 | 84694 | 13 |
Deletion | Chr5 | 20759162 | 20759164 | 2 | |
Deletion | Chr11 | 21057975 | 21057982 | 7 | |
Deletion | Chr8 | 22336040 | 22336041 | 1 | LOC_Os08g35440 |
Deletion | Chr2 | 23015341 | 23015342 | 1 | |
Deletion | Chr4 | 26030953 | 26030987 | 34 | |
Deletion | Chr8 | 27425745 | 27425751 | 6 | |
Deletion | Chr6 | 28983472 | 28983477 | 5 | |
Deletion | Chr1 | 30296001 | 30317000 | 21000 | 3 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 24289012 | 24289013 | 2 | |
Insertion | Chr12 | 25982191 | 25982192 | 2 | |
Insertion | Chr8 | 9212042 | 9212042 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr8 | 6414974 | 6420712 | LOC_Os08g10890 |
Inversion | Chr1 | 30286204 | 30447511 | LOC_Os01g52970 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr12 | 3861360 | Chr11 | 11628950 | 2 |