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Mutant Information

Mutant Name	FN-327 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-327 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	1895170	G-A	HET	INTERGENIC
SBS	Chr10	3458637	T-A	HOMO	INTERGENIC
SBS	Chr11	28723639	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47500
SBS	Chr12	13475529	C-T	HOMO	INTERGENIC
SBS	Chr12	13475530	G-T	HOMO	INTERGENIC
SBS	Chr3	20145042	G-T	HET	INTERGENIC
SBS	Chr3	24508203	T-A	HOMO	INTERGENIC
SBS	Chr4	18560322	C-T	HET	UTR_3_PRIME
SBS	Chr4	20323978	C-T	HET	INTERGENIC
SBS	Chr4	25730618	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43490
SBS	Chr4	31653128	G-T	HET	STOP_GAINED	LOC_Os04g53150
SBS	Chr5	10064991	G-A	HET	INTERGENIC
SBS	Chr5	4794471	C-T	HET	INTERGENIC
SBS	Chr6	15804916	T-C	HET	INTRON
SBS	Chr6	15804918	A-T	HET	INTRON
SBS	Chr6	24180715	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	6801481	A-C	HOMO	INTERGENIC
SBS	Chr7	13044831	G-A	HET	INTERGENIC
SBS	Chr8	6423652	A-G	HET	INTERGENIC
SBS	Chr8	7516616	T-C	HOMO	INTERGENIC
SBS	Chr9	17653367	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29070
SBS	Chr9	5190394	T-A	HET	INTERGENIC
SBS	Chr9	7095537	T-C	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	11073806	11073819	13
Deletion	Chr11	11518001	11629000	111000	11
Deletion	Chr6	16192228	16192231	3
Deletion	Chr8	17537829	17537830	1
Deletion	Chr2	19409939	19494633	84694	13
Deletion	Chr5	20759162	20759164	2
Deletion	Chr11	21057975	21057982	7
Deletion	Chr8	22336040	22336041	1	LOC_Os08g35440
Deletion	Chr2	23015341	23015342	1
Deletion	Chr4	26030953	26030987	34
Deletion	Chr8	27425745	27425751	6
Deletion	Chr6	28983472	28983477	5
Deletion	Chr1	30296001	30317000	21000	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	25982191	25982192	2
Insertion	Chr7	24289012	24289013	2
Insertion	Chr8	9212042	9212042	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6414974	6420712	LOC_Os08g10890
Inversion	Chr1	30286204	30447511	LOC_Os01g52970

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3861360	Chr11	11628950	2

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