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Mutant Information

Mutant NameFN-362 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-362 Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%)
  • TO:0000207 (Plant height) = Normal (Between 75% and 125%)
  • TO:0000445 (Seed Number) = Low (Between 25% and 74%)
  • TO:0000639 (Seed fertility) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 37
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr110982486C-AHETNON_SYNONYMOUS_CODINGLOC_Os01g19410
SBSChr110982487T-AHETNON_SYNONYMOUS_CODINGLOC_Os01g19410
SBSChr130627304A-GHETINTRON
SBSChr136524177C-THETINTERGENIC
SBSChr139438429G-THETINTRON
SBSChr139438432G-THETINTRON
SBSChr139535497C-THETINTERGENIC
SBSChr139537107A-THETINTERGENIC
SBSChr140771432G-THETINTRON
SBSChr1011294952A-GHETINTERGENIC
SBSChr1023018680G-AHETINTERGENIC
SBSChr107596014T-GHETINTERGENIC
SBSChr109145015G-AHETNON_SYNONYMOUS_CODINGLOC_Os10g18042
SBSChr1124237317T-AHETINTERGENIC
SBSChr1128348102G-AHETINTERGENIC
SBSChr1212549351G-AHETSYNONYMOUS_CODING
SBSChr1218928546T-CHETSYNONYMOUS_CODING
SBSChr1223416057T-CHOMOINTERGENIC
SBSChr218046315C-THOMONON_SYNONYMOUS_CODINGLOC_Os02g30310
SBSChr27145828A-CHETNON_SYNONYMOUS_CODINGLOC_Os02g13400
SBSChr314413091C-THOMOINTERGENIC
SBSChr36460815G-AHOMOINTRON
SBSChr37129959C-THOMOINTRON
SBSChr418317969C-THOMOINTERGENIC
SBSChr49445444C-THOMOINTERGENIC
SBSChr51965199A-GHETINTERGENIC
SBSChr523854540G-THOMOINTRON
SBSChr524448941C-AHOMOINTERGENIC
SBSChr55379369C-THETINTERGENIC
SBSChr57676719C-GHETINTERGENIC
SBSChr611478896G-AHETINTERGENIC
SBSChr621577017C-THETINTERGENIC
SBSChr72716436G-THOMOINTERGENIC
SBSChr826273248A-GHETINTERGENIC
SBSChr9136065T-AHETINTERGENIC
SBSChr918900903G-AHETINTERGENIC
SBSChr95038416T-CHETINTERGENIC

Deletions: 26
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr543651243652210
DeletionChr1153773253774210LOC_Os11g02010
DeletionChr99013689013702
DeletionChr121524981152499211LOC_Os12g03750
DeletionChr5585367273402681486596201
DeletionChr1736957073695711
DeletionChr17712663771267916LOC_Os01g13760
DeletionChr5852443085244355
DeletionChr4852872085287222LOC_Os04g15690
DeletionChr118660977866098912
DeletionChr7898489689848971
DeletionChr11941219594121961
DeletionChr910859113108591152LOC_Os09g17760
DeletionChr1113186660131866644
DeletionChr417203876172038782
DeletionChr719026030190260322
DeletionChr319769227197692281LOC_Os03g35690
DeletionChr420671766206717693
DeletionChr1213963082139632618
DeletionChr52177000121832000620009
DeletionChr1021963548219635491
DeletionChr822082082220820842
DeletionChr1022512356225123604
DeletionChr12235357232353577047
DeletionChr1125755978257559813
DeletionChr12792792327928528605LOC_Os01g48700

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr142357357423573626
InsertionChr332604039326040391

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr759672296916445
InversionChr62243439022481883LOC_Os06g38030

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1215670080Chr129528142
TranslocationChr719431518Chr521770265LOC_Os07g32590
TranslocationChr719432136Chr55853680LOC_Os07g32590
TranslocationChr1022229275Chr4273586172
TranslocationChr1123286499Chr141587095