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Mutant Information

Mutant Name	FN-379 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-379 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10149735	T-C	HET	INTRON
SBS	Chr1	10403381	C-A	HET	INTRON
SBS	Chr1	14514088	T-C	HET	INTRON
SBS	Chr1	18872575	C-T	HET	INTERGENIC
SBS	Chr1	31046221	G-A	HOMO	INTERGENIC
SBS	Chr1	40772804	T-A	HOMO	INTERGENIC
SBS	Chr1	6504043	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g11946
SBS	Chr10	4490047	G-C	HET	INTERGENIC
SBS	Chr12	13611880	C-T	HET	INTERGENIC
SBS	Chr12	18095025	G-A	HOMO	INTERGENIC
SBS	Chr12	22937489	C-T	HET	INTERGENIC
SBS	Chr12	5187843	C-A	HET	INTERGENIC
SBS	Chr2	34234385	C-A	HET	INTERGENIC
SBS	Chr3	20012936	C-T	HOMO	INTERGENIC
SBS	Chr3	34765646	A-T	HOMO	INTERGENIC
SBS	Chr4	29646275	G-T	HOMO	INTERGENIC
SBS	Chr4	29646276	C-T	HOMO	INTERGENIC
SBS	Chr4	32705455	G-T	HOMO	INTERGENIC
SBS	Chr4	8974886	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16510
SBS	Chr6	4917868	A-T	HET	INTERGENIC
SBS	Chr7	11081193	C-T	HET	INTERGENIC
SBS	Chr7	11406390	C-G	HET	SYNONYMOUS_CODING
SBS	Chr7	28002985	T-C	HOMO	INTRON
SBS	Chr8	25772552	T-G	HET	INTERGENIC
SBS	Chr8	3560232	C-T	HET	INTERGENIC
SBS	Chr8	3560233	C-A	HET	INTERGENIC
SBS	Chr9	1128895	A-G	HET	INTERGENIC
SBS	Chr9	4474755	T-C	HET	INTERGENIC

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1821001	1987000	166000	30
Deletion	Chr11	9824497	9824498	1
Deletion	Chr1	22430383	22430384	1	LOC_Os01g39770
Deletion	Chr4	23426828	23426832	4
Deletion	Chr2	27511001	27547000	36000	4
Deletion	Chr3	33162347	33162356	9

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	13611865	13611866	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25458508	25698393	LOC_Os01g45274

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1986744	Chr1	30995581	2
Translocation	Chr3	27483899	Chr1	30002618
Translocation	Chr3	32204940	Chr1	29998267	2

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