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Mutant Information |
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Mutant Name | FN-4 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-4 Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 9
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr4 | 2841697 | A-G | Homo | INTERGENIC | |
SBS | Chr4 | 4979583 | G-A | HET | INTRON | |
SBS | Chr5 | 6820653 | A-T | Homo | INTERGENIC | |
SBS | Chr8 | 17213482 | A-G | Homo | INTERGENIC | |
SBS | Chr11 | 14194469 | C-A | Homo | INTERGENIC | |
SBS | Chr11 | 20353696 | C-T | Homo | INTERGENIC | |
SBS | Chr12 | 13429451 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g23660 |
SBS | Chr12 | 24357293 | C-G | Homo | INTERGENIC | |
SBS | Chr12 | 24947361 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g40279 |
Deletions: 17
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 576306 | 576309 | 3 | |
Deletion | Chr4 | 4980186 | 4980187 | 1 | LOC_Os04g09360 |
Deletion | Chr1 | 5511174 | 5511177 | 3 | LOC_Os01g10450 |
Deletion | Chr10 | 9320063 | 9320065 | 2 | |
Deletion | Chr11 | 9451403 | 9451404 | 1 | |
Deletion | Chr2 | 11589164 | 11589166 | 2 | |
Deletion | Chr11 | 13549002 | 13549011 | 9 | |
Deletion | Chr3 | 16179461 | 16179470 | 9 | |
Deletion | Chr2 | 17270066 | 17270092 | 26 | |
Deletion | Chr12 | 17981599 | 17981600 | 1 | |
Deletion | Chr4 | 18638166 | 18638167 | 1 | |
Deletion | Chr8 | 21342872 | 21342877 | 5 | |
Deletion | Chr1 | 22748001 | 22855000 | 107000 | 16 |
Deletion | Chr6 | 23288961 | 23288962 | 1 | |
Deletion | Chr5 | 26243666 | 26243690 | 24 | |
Deletion | Chr2 | 34642393 | 34642403 | 10 | |
Deletion | Chr1 | 35191370 | 35191371 | 1 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Insertion | Chr3 | 7279858 | 7279858 | 1 | |
Insertion | Chr4 | 22388098 | 22388098 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 5439535 | 8436014 | 2 |
Inversion | Chr2 | 6938220 | 12334028 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 1242386 | Chr1 | 443224 | 2 |
Translocation | Chr12 | 1243261 | Chr1 | 443215 | 2 |