Search Results
| Mutant Information |
|---|
| Mutant Name | FN-41 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-41 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 11
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 606410 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 606411 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3116779 | C-T | Homo | STOP_GAINED | LOC_Os04g06010 |
| SBS | Chr5 | 28009513 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 17438543 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5659275 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 21476270 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 21561864 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g40250 |
| SBS | Chr10 | 21561865 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g40250 |
| SBS | Chr10 | 22540434 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16577148 | T-C | Homo | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1095879 | 1095880 | 1 | |
| Deletion | Chr2 | 5259932 | 5259987 | 55 | LOC_Os02g10100 |
| Deletion | Chr4 | 6779001 | 7480000 | 701000 | 102 |
| Deletion | Chr5 | 7657168 | 7657611 | 443 | |
| Deletion | Chr2 | 8183671 | 8183672 | 1 | LOC_Os02g14770 |
| Deletion | Chr12 | 11879114 | 11908875 | 29761 | 6 |
| Deletion | Chr1 | 15985876 | 15985890 | 14 | LOC_Os01g28550 |
| Deletion | Chr7 | 16913024 | 16913027 | 3 | |
| Deletion | Chr8 | 16942061 | 16942062 | 1 | |
| Deletion | Chr2 | 17729027 | 17729037 | 10 | |
| Deletion | Chr10 | 19939828 | 19939849 | 21 | |
| Deletion | Chr2 | 21301784 | 21301798 | 14 | |
| Deletion | Chr10 | 21491890 | 21498428 | 6538 | LOC_Os10g40150 |
| Deletion | Chr3 | 21625620 | 21625626 | 6 | |
| Deletion | Chr3 | 22271258 | 22271264 | 6 | |
| Deletion | Chr2 | 24784550 | 24784577 | 27 | |
| Deletion | Chr8 | 27883292 | 27883328 | 36 | |
| Deletion | Chr2 | 31486549 | 31486557 | 8 | |
| Deletion | Chr2 | 34435828 | 34435843 | 15 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 14740268 | 14740273 | 6 | |
| Insertion | Chr8 | 325913 | 325916 | 4 | |
| Insertion | Chr3 | 27783107 | 27783107 | 1 | |
| Insertion | Chr6 | 17168192 | 17168192 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 2830498 | 3114970 | LOC_Os03g06210 |
| Inversion | Chr5 | 6846966 | 7515281 | LOC_Os05g11980 |
| Inversion | Chr5 | 6867112 | 7510322 | |
| Inversion | Chr11 | 20039859 | 20175364 | LOC_Os11g34440 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 7457300 | Chr1 | 15348113 | |
| Translocation | Chr4 | 18702339 | Chr1 | 15347442 | LOC_Os01g27490 |
| Translocation | Chr4 | 18702340 | Chr1 | 13635566 | LOC_Os01g24200 |