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| Mutant Information |
|---|
| Mutant Name | FN-52 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-52 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14885665 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 14962819 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 17595017 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 18970269 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 25550407 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 6330260 | A-T | HET | INTRON | |
| SBS | Chr10 | 11674568 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 14255429 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 1481899 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 10798417 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 16907724 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 15826836 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 11561829 | C-T | HET | STOP_GAINED | LOC_Os03g20430 |
| SBS | Chr3 | 22847910 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 32021260 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 36308348 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 10874556 | G-T | HOMO | STOP_GAINED | LOC_Os04g19540 |
| SBS | Chr4 | 12321483 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 12321485 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 20011748 | A-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 24784483 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 30229311 | A-G | HET | INTRON | |
| SBS | Chr4 | 30700933 | A-T | HET | INTRON | |
| SBS | Chr5 | 23163552 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 23163554 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 20507029 | C-A | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 3070001 | 3900000 | 830000 | 126 |
| Deletion | Chr8 | 3542717 | 3542723 | 6 | |
| Deletion | Chr8 | 5317279 | 5317282 | 3 | LOC_Os08g09170 |
| Deletion | Chr6 | 8095325 | 8095344 | 19 | |
| Deletion | Chr2 | 9443513 | 9443526 | 13 | |
| Deletion | Chr4 | 9762200 | 9762201 | 1 | |
| Deletion | Chr3 | 10380023 | 10380043 | 20 | |
| Deletion | Chr3 | 10904001 | 10943000 | 39000 | 10 |
| Deletion | Chr7 | 13756122 | 13756276 | 154 | |
| Deletion | Chr3 | 17949863 | 17949864 | 1 | LOC_Os03g31510 |
| Deletion | Chr1 | 20254792 | 20254822 | 30 | |
| Deletion | Chr7 | 21693352 | 21693353 | 1 | |
| Deletion | Chr8 | 21867363 | 21867367 | 4 | |
| Deletion | Chr11 | 25263515 | 25263531 | 16 | LOC_Os11g42010 |
| Deletion | Chr2 | 29672294 | 29672306 | 12 | |
| Deletion | Chr1 | 31864775 | 31864780 | 5 | LOC_Os01g55350 |
| Deletion | Chr1 | 32393360 | 32393361 | 1 | |
| Deletion | Chr1 | 34039124 | 34039128 | 4 | |
| Deletion | Chr3 | 34237063 | 34237084 | 21 |
No Insertion
No Inversion
No Translocation