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Mutant Information

Mutant Name	FN-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-6 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4976663	T-C	Homo	INTERGENIC
SBS	Chr2	21078812	G-A	Homo	INTERGENIC
SBS	Chr2	26128367	T-C	Homo	INTERGENIC
SBS	Chr7	19653400	A-G	Homo	INTERGENIC
SBS	Chr12	7300309	T-A	Homo	INTRON
SBS	Chr12	20408313	C-A	Homo	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	134638	134639	1
Deletion	Chr11	1817003	1817005	2
Deletion	Chr10	2808188	2811622	3434
Deletion	Chr11	4883957	4884345	388
Deletion	Chr3	5067028	5067029	1
Deletion	Chr11	5466794	5466813	19
Deletion	Chr7	6599368	6599369	1
Deletion	Chr12	7507102	7507103	1
Deletion	Chr11	7596076	7596091	15
Deletion	Chr1	14433734	14433766	32
Deletion	Chr9	15666765	15666766	1
Deletion	Chr1	17687057	17687063	6
Deletion	Chr2	19017024	19019458	2434	LOC_Os02g32190
Deletion	Chr3	20927026	20927028	2	LOC_Os03g37736
Deletion	Chr2	23556865	23556872	7
Deletion	Chr4	26308576	26308577	1
Deletion	Chr3	35553982	35553992	10	LOC_Os03g62850
Deletion	Chr1	35589626	35720203	130577	21
Deletion	Chr1	37982087	37982088	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7606295	7606311	17

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15217236	18268438	LOC_Os01g27260
Inversion	Chr3	26511572	26973882
Inversion	Chr3	26512565	26973891	LOC_Os03g46870

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1141010	Chr3	26511575
Translocation	Chr10	2811614	Chr1	16050711	LOC_Os01g28680
Translocation	Chr11	4884347	Chr10	7992874
Translocation	Chr12	11378711	Chr1	17632894	2
Translocation	Chr8	11869989	Chr3	2734877	LOC_Os08g19830
Translocation	Chr10	22183543	Chr4	7084286
Translocation	Chr6	28950491	Chr1	16050689	2
Translocation	Chr6	28950499	Chr1	16050462	2