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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-60 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-60 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17267633	A-G	HOMO	INTRON
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr2	12202682	G-A	HET	INTERGENIC
SBS	Chr5	1227968	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g03100
SBS	Chr5	19928579	A-T	HET	INTRON
SBS	Chr6	15585617	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	24377401	G-A	HOMO	INTERGENIC
SBS	Chr7	11113080	T-G	HET	INTRON
SBS	Chr7	12975660	G-C	HET	INTERGENIC
SBS	Chr7	14012910	A-G	HET	INTRON
SBS	Chr9	903139	T-A	HET	INTERGENIC
SBS	Chr9	6030439	G-A	HET	INTERGENIC
SBS	Chr9	18766033	G-A	HET	INTERGENIC
SBS	Chr11	1245539	C-A	HET	INTERGENIC
SBS	Chr12	2573274	C-T	HOMO	INTRON
SBS	Chr12	23700208	T-A	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1645573	1645578	5	LOC_Os06g04030
Deletion	Chr3	4656775	4656779	4
Deletion	Chr10	4852001	5473000	621000	99
Deletion	Chr5	5782351	5782352	1	LOC_Os05g10610
Deletion	Chr9	13887201	13887202	1
Deletion	Chr5	17053824	17054292	468	LOC_Os05g29050
Deletion	Chr5	17144872	17144908	36
Deletion	Chr1	18016734	18025731	8997	2
Deletion	Chr10	19014962	19014963	1
Deletion	Chr5	25185334	25185355	21	LOC_Os05g43280
Deletion	Chr6	27679207	27679213	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	5501165	5501165	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6021507	27139162
Inversion	Chr10	9573644	9724903	LOC_Os10g19100
Inversion	Chr10	20156254	20353243	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1183571	Chr3	6018853	LOC_Os07g03110