Search Results
| Mutant Information |
|---|
| Mutant Name | FN-66 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-66 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 34288142 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 10199560 | T-A | HOMO | INTRON | |
| SBS | Chr3 | 35198703 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g62120 |
| SBS | Chr4 | 8353902 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 10717057 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g19270 |
| SBS | Chr4 | 15325223 | C-A | HOMO | STOP_GAINED | LOC_Os04g26290 |
| SBS | Chr4 | 19045630 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 22746071 | A-T | HOMO | INTRON | |
| SBS | Chr5 | 14444785 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 19408095 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 24352187 | G-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 20211010 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 25778143 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 27712182 | T-G | HET | INTRON | |
| SBS | Chr7 | 10427829 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 4155116 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 6592142 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 8375445 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 20484284 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 10085587 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 16769362 | G-T | HET | INTRON | |
| SBS | Chr10 | 22178807 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 14835925 | A-T | HOMO | INTRON | |
| SBS | Chr11 | 17938952 | T-C | HOMO | INTRON | |
| SBS | Chr11 | 25754712 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 13960431 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 17036139 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 17540369 | G-T | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 896927 | 896957 | 30 | |
| Deletion | Chr2 | 1196138 | 1196148 | 10 | |
| Deletion | Chr3 | 1223449 | 1223451 | 2 | |
| Deletion | Chr6 | 4479489 | 4479495 | 6 | |
| Deletion | Chr1 | 10007813 | 10007817 | 4 | |
| Deletion | Chr3 | 10190865 | 10190884 | 19 | |
| Deletion | Chr12 | 10274501 | 10274525 | 24 | |
| Deletion | Chr4 | 11638495 | 11638496 | 1 | LOC_Os04g20749 |
| Deletion | Chr2 | 17410169 | 17417980 | 7811 | 3 |
| Deletion | Chr5 | 17872225 | 17872231 | 6 | |
| Deletion | Chr10 | 21355368 | 21355371 | 3 | LOC_Os10g39910 |
| Deletion | Chr2 | 21992675 | 22063636 | 70961 | 12 |
| Deletion | Chr2 | 22794862 | 22794866 | 4 | |
| Deletion | Chr5 | 24235700 | 24291181 | 55481 | 11 |
| Deletion | Chr12 | 24465001 | 24752000 | 287000 | 39 |
| Deletion | Chr1 | 25351269 | 25351272 | 3 | |
| Deletion | Chr11 | 25399803 | 25430255 | 30452 | 5 |
| Deletion | Chr3 | 33753194 | 33753220 | 26 | |
| Deletion | Chr3 | 34296734 | 34296749 | 15 | |
| Deletion | Chr1 | 37189700 | 37189715 | 15 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 7561931 | 7561931 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 16627036 | 17244538 | |
| Inversion | Chr2 | 20884260 | 21405346 | LOC_Os02g34830 |
No Translocation